View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12907_low_6 (Length: 322)
Name: NF12907_low_6
Description: NF12907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12907_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 18 - 293
Target Start/End: Complemental strand, 42172232 - 42171952
Alignment:
| Q |
18 |
gtctagtctaggatgctgcgattcaccattttctacatgaaaaaagataatgaattaaaaatcccctcatcattcctcgtgcataacaaaatagaattta |
117 |
Q |
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| T |
42172232 |
gtctagtctaggatgctgcgattcaccattttctacatgaaaaaagataatgaattaaaaatcccctcatcattcctcgtgcataacaaaatagaattta |
42172133 |
T |
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| Q |
118 |
tattaaggattgtagggattcctaataattatttctcgtgcaatcagaaaggggcattattcgactgatcatttgagtgttggac-aaacaacagaaagt |
216 |
Q |
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| T |
42172132 |
tattaaggattgtagggattcttaataattatttctcgtgcaatcagaaaggggcattattcgactgatcatttgagtgttggacgaaaaaacagaaagt |
42172033 |
T |
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| Q |
217 |
caaaaa-ta-tttgaggttcttgaaaa--caaaaacattgaaatcagagagatatggtatgctcaaataactagacagaaa |
293 |
Q |
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| T |
42172032 |
caaaaagtacaataatgttcttgaaaaacaaaaaacattgaaatcaaagagatatggtatgctcaaataactagacagaaa |
42171952 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 91
Target Start/End: Original strand, 21684712 - 21684761
Alignment:
| Q |
42 |
accattttctacatgaaaaaagataatgaattaaaaatcccctcatcatt |
91 |
Q |
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| T |
21684712 |
accattttgaacatgaaaaaggataatgaattaaaaatcccctcatcatt |
21684761 |
T |
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