View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12907_low_7 (Length: 317)
Name: NF12907_low_7
Description: NF12907
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12907_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 107 - 308
Target Start/End: Complemental strand, 10233978 - 10233777
Alignment:
| Q |
107 |
gtagatgtcattggagttgttcaggacatgggttactgtcaactaaatgaagggaaaaaacttcaagtcaatttcactatgaaagatataaggtttagtt |
206 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
10233978 |
gtagatgtcattggagttgttcaggacatgggttactgtcaactaaatgaagggaaaaagcttcaagtcaatttcactatgaaagatataaggtttagtt |
10233879 |
T |
|
| Q |
207 |
acactttagttatcatattgcaatacttattaccttataattttttccttagagttttcaaccaacttaaattcctttcgtgttatgattcttagtgata |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10233878 |
acactttagttatcatattgcaatacttattaccttataattttttccttagagttttcaaccaacttaaattcctttcgtgttatgattctttgtgata |
10233779 |
T |
|
| Q |
307 |
tt |
308 |
Q |
| |
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|| |
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|
| T |
10233778 |
tt |
10233777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 107 - 308
Target Start/End: Complemental strand, 8336862 - 8336661
Alignment:
| Q |
107 |
gtagatgtcattggagttgttcaggacatgggttactgtcaactaaatgaagggaaaaaacttcaagtcaatttcactatgaaagatataaggtttagtt |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8336862 |
gtagatgtcattggagttgttcaggacatgggttactgtcaactaaatgaagggaaaaagcttcaagtcaatttcactatgaaagatataaggtttagtt |
8336763 |
T |
|
| Q |
207 |
acactttagttatcatattgcaatacttattaccttataattttttccttagagttttcaaccaacttaaattcctttcgtgttatgattcttagtgata |
306 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8336762 |
acactttagttatcatattgcaatacttattaccttataattttttccttacagttttcaaccaacttaaattcctttcgtgttatgattcttagtgata |
8336663 |
T |
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| Q |
307 |
tt |
308 |
Q |
| |
|
|| |
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|
| T |
8336662 |
tt |
8336661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 162
Target Start/End: Complemental strand, 22080888 - 22080835
Alignment:
| Q |
109 |
agatgtcattggagttgttcaggacatgggttactgtcaactaaatgaagggaa |
162 |
Q |
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||||||||||||| | || ||||||||||| ||||||||| | ||||||||||| |
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| T |
22080888 |
agatgtcattggaatggtccaggacatgggctactgtcaattgaatgaagggaa |
22080835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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