View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12908_high_1 (Length: 362)

Name: NF12908_high_1
Description: NF12908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12908_high_1
NF12908_high_1
[»] chr4 (2 HSPs)
chr4 (11-362)||(28793562-28793912)
chr4 (216-277)||(22336868-22336929)
[»] chr8 (1 HSPs)
chr8 (216-285)||(30869981-30870050)
[»] chr7 (5 HSPs)
chr7 (216-285)||(3581994-3582063)
chr7 (216-300)||(10081749-10081833)
chr7 (216-267)||(5220493-5220544)
chr7 (219-300)||(45615198-45615279)
chr7 (220-300)||(9419550-9419630)
[»] chr3 (2 HSPs)
chr3 (216-283)||(27209701-27209768)
chr3 (216-272)||(22276231-22276287)
[»] chr1 (3 HSPs)
chr1 (216-285)||(10023907-10023976)
chr1 (197-285)||(12760349-12760437)
chr1 (216-277)||(25695867-25695928)
[»] chr2 (5 HSPs)
chr2 (216-300)||(31069664-31069748)
chr2 (216-285)||(35509017-35509086)
chr2 (216-267)||(27885398-27885449)
chr2 (220-277)||(12544871-12544928)
chr2 (216-288)||(34900540-34900612)


Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 11 - 362
Target Start/End: Complemental strand, 28793912 - 28793562
Alignment:
Q  11 agcataggccaccacaaagacgcccaaaaccaaatgaaactatcaaaagcaaaatttagggagttaattttatttcataaaaaaattcttaaaatattta 110  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28793912 agcaaaggccaccacaaagacacccaaaaccaaatgaaactatcaaaagcaaaatttagggagttaattttatttcataaaaaaattcttaaaatattta 28793813  T
Q  111 gtgtgatgagannnnnnnnnnnnnnaatnnnnnnnccacttccaaagaacatgtgtgatcataatgttttcataaaaaccacttctaaggaacatatgtg 210  Q
    |||||||||||              | |       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  28793812 gtgtgatgagatttttttttatttta-taaaaaaaccacttccaaagaacatgtgtgatcataatgttttcataaaaaccacttctaaggaacatgtgtg 28793714  T
Q  211 atagaaatgttttcctaaaaaccacttttaagatgtgaacttaaccatatccaccaattgaagcacaaacgtctcatgtcctaaaaagatacaaacttac 310  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  28793713 atagaaatgttttcctaaaaaccacttttaagaggtgaacttaaccatatccaccaattgaagcacaaacgtctcatgtcctaaaaagatacgaacttac 28793614  T
Q  311 aagatccccacaatgaccacacaatagtttacctaactaatggggaacataa 362  Q
    |||||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  28793613 aagatccccataatgaccacacaatagtttacctaactaatgcggaacataa 28793562  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 22336868 - 22336929
Alignment:
Q  216 aatgttttcctaaaaaccacttttaagatgtgaacttaaccatatccaccaattgaagcaca 277  Q
    |||||||| |||||| ||||||  || | ||||||||||||||||||||||| || ||||||    
T  22336868 aatgtttttctaaaatccacttccaataggtgaacttaaccatatccaccaactggagcaca 22336929  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 30870050 - 30869981
Alignment:
Q  216 aatgttttcctaaaaaccacttttaagatgtgaacttaaccatatccaccaattgaagcacaaacgtctc 285  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  30870050 aatgttttcgtaaaaaccacttttaagaggtgaacttaaccatatccaccaattggagcacaaacgtctc 30869981  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 216 - 285
Target Start/End: Original strand, 3581994 - 3582063
Alignment:
Q  216 aatgttttcctaaaaaccacttttaagatgtgaacttaaccatatccaccaattgaagcacaaacgtctc 285  Q
    ||||||||||||||||||||||| |||| ||||| ||||||||||||||||| |  ||||||||||||||    
T  3581994 aatgttttcctaaaaaccactttcaagaggtgaatttaaccatatccaccaactcgagcacaaacgtctc 3582063  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 216 - 300
Target Start/End: Complemental strand, 10081833 - 10081749
Alignment:
Q  216 aatgttttcctaaaaaccacttttaagatgtgaacttaaccatatccaccaattgaagcacaaacgtctcatgtcctaaaaagat 300  Q
    |||||||||||||||| |||||| |||||||||  ||||||||||||||||| |  |||||| | ||||| || || ||||||||    
T  10081833 aatgttttcctaaaaatcactttcaagatgtgagtttaaccatatccaccaagtcgagcacataagtctcctgccccaaaaagat 10081749  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 267
Target Start/End: Complemental strand, 5220544 - 5220493
Alignment:
Q  216 aatgttttcctaaaaaccacttttaagatgtgaacttaaccatatccaccaa 267  Q
    ||||||||||||||||||| ||  |||| |||||||||||||||||||||||    
T  5220544 aatgttttcctaaaaaccagttccaagaggtgaacttaaccatatccaccaa 5220493  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 300
Target Start/End: Complemental strand, 45615279 - 45615198
Alignment:
Q  219 gttttcctaaaaaccacttttaagatgtgaacttaaccatatccaccaattgaagcacaaacgtctcatgtcctaaaaagat 300  Q
    ||||| ||||||| || ||| |||| ||||| ||||||||||||| ||| |  |||||||||||||| | |||||| |||||    
T  45615279 gtttttctaaaaatcattttcaagaggtgaatttaaccatatccatcaactagagcacaaacgtctcttatcctaagaagat 45615198  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 220 - 300
Target Start/End: Complemental strand, 9419630 - 9419550
Alignment:
Q  220 ttttcctaaaaaccacttttaagatgtgaacttaaccatatccaccaattgaagcacaaacgtctcatgtcctaaaaagat 300  Q
    |||||||| |||||||||  |||| |||||  |||||||||||||||| |||| |||| || |||| || || ||||||||    
T  9419630 ttttcctacaaaccacttcaaagaggtgaatctaaccatatccaccaactgaaacacatacatctcttgccccaaaaagat 9419550  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 216 - 283
Target Start/End: Complemental strand, 27209768 - 27209701
Alignment:
Q  216 aatgttttcctaaaaaccacttttaagatgtgaacttaaccatatccaccaattgaagcacaaacgtc 283  Q
    ||||||||||||||||||| ||| ||||  ||||||||||||||||||||||||  ||||||||||||    
T  27209768 aatgttttcctaaaaaccaatttcaagagatgaacttaaccatatccaccaattagagcacaaacgtc 27209701  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 22276231 - 22276287
Alignment:
Q  216 aatgttttcctaaaaaccacttttaagatgtgaacttaaccatatccaccaattgaa 272  Q
    |||||||||||||||| |||||| |||| ||||| |||||||| |||||||| ||||    
T  22276231 aatgttttcctaaaaaacactttcaagaggtgaatttaaccatgtccaccaactgaa 22276287  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 10023976 - 10023907
Alignment:
Q  216 aatgttttcctaaaaaccacttttaagatgtgaacttaaccatatccaccaattgaagcacaaacgtctc 285  Q
    |||||||||| ||||||||| ||||||| ||||| |||||||||||||| || || ||||||||||||||    
T  10023976 aatgttttcccaaaaaccacctttaagaggtgaatttaaccatatccacgaactggagcacaaacgtctc 10023907  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 197 - 285
Target Start/End: Complemental strand, 12760437 - 12760349
Alignment:
Q  197 aaggaacatatgtgatagaaatgttttcctaaaaaccacttttaagatgtgaacttaaccatatccaccaattgaagcacaaacgtctc 285  Q
    |||||||| |||||||   ||||||||| ||||||||||||  |||| ||||| ||||| |||||||| || || ||||||||||||||    
T  12760437 aaggaacaaatgtgatcataatgttttcttaaaaaccacttccaagaggtgaatttaacaatatccactaactggagcacaaacgtctc 12760349  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 277
Target Start/End: Original strand, 25695867 - 25695928
Alignment:
Q  216 aatgttttcctaaaaaccacttttaagatgtgaacttaaccatatccaccaattgaagcaca 277  Q
    |||||||||||||||||| |||  |||||||||| ||||| |||||||| || || ||||||    
T  25695867 aatgttttcctaaaaacctcttccaagatgtgaatttaactatatccacaaactggagcaca 25695928  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 300
Target Start/End: Complemental strand, 31069748 - 31069664
Alignment:
Q  216 aatgttttcctaaaaaccacttttaagatgtgaacttaaccatatccaccaattgaagcacaaacgtctcatgtcctaaaaagat 300  Q
    ||||||||||||||||| ||||| |||| ||||| ||||||||||||| ||  |||||| ||||||||||||  || ||||||||    
T  31069748 aatgttttcctaaaaactactttcaagaggtgaatttaaccatatccatcatctgaagctcaaacgtctcattccccaaaaagat 31069664  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 285
Target Start/End: Complemental strand, 35509086 - 35509017
Alignment:
Q  216 aatgttttcctaaaaaccacttttaagatgtgaacttaaccatatccaccaattgaagcacaaacgtctc 285  Q
    ||||||||||||||||||||    |||| ||| | ||||||||||||||||||||||||| | |||||||    
T  35509086 aatgttttcctaaaaaccacgcccaagaggtggatttaaccatatccaccaattgaagcatagacgtctc 35509017  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 216 - 267
Target Start/End: Original strand, 27885398 - 27885449
Alignment:
Q  216 aatgttttcctaaaaaccacttttaagatgtgaacttaaccatatccaccaa 267  Q
    |||||||| |||||||||||||| |||| ||||| ||||| |||||||||||    
T  27885398 aatgtttttctaaaaaccactttcaagaggtgaatttaactatatccaccaa 27885449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 277
Target Start/End: Original strand, 12544871 - 12544928
Alignment:
Q  220 ttttcctaaaaaccacttttaagatgtgaacttaaccatatccaccaattgaagcaca 277  Q
    ||||||||||||||||||  ||||  |||| ||||||||||||||||| || ||||||    
T  12544871 ttttcctaaaaaccacttccaagagatgaatttaaccatatccaccaactggagcaca 12544928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 288
Target Start/End: Original strand, 34900540 - 34900612
Alignment:
Q  216 aatgttttcctaaaaaccacttttaagatgtgaacttaaccatatccaccaattgaagcacaaacgtctcatg 288  Q
    ||||||||  ||||||| | |||||| ||||||| |||| |||||||||||| |  |||||||| ||||||||    
T  34900540 aatgtttttttaaaaacaatttttaacatgtgaatttaatcatatccaccaactatagcacaaatgtctcatg 34900612  T

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