View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12908_high_2 (Length: 339)

Name: NF12908_high_2
Description: NF12908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12908_high_2
NF12908_high_2
[»] chr2 (5 HSPs)
chr2 (1-333)||(42117689-42118016)
chr2 (149-225)||(28715937-28716013)
chr2 (151-246)||(31592976-31593071)
chr2 (146-253)||(5198716-5198825)
chr2 (146-253)||(15603024-15603133)
[»] chr7 (4 HSPs)
chr7 (146-316)||(16183692-16183868)
chr7 (146-303)||(8140025-8140185)
chr7 (193-303)||(8138569-8138681)
chr7 (146-224)||(30235198-30235278)
[»] chr4 (7 HSPs)
chr4 (146-316)||(10427360-10427536)
chr4 (146-228)||(30950244-30950327)
chr4 (146-253)||(24520086-24520195)
chr4 (146-253)||(42266050-42266159)
chr4 (146-253)||(42270769-42270878)
chr4 (146-253)||(48701882-48701991)
chr4 (156-204)||(21515529-21515577)
[»] chr1 (3 HSPs)
chr1 (146-329)||(4130152-4130340)
chr1 (162-316)||(46191311-46191470)
chr1 (158-251)||(30697188-30697282)
[»] chr6 (4 HSPs)
chr6 (146-253)||(21966698-21966805)
chr6 (146-253)||(1234848-1234957)
chr6 (210-283)||(23012626-23012699)
chr6 (146-253)||(27878770-27878879)
[»] chr3 (3 HSPs)
chr3 (146-197)||(54546088-54546139)
chr3 (248-316)||(24671187-24671256)
chr3 (146-253)||(5823336-5823445)
[»] chr5 (5 HSPs)
chr5 (146-253)||(34360103-34360212)
chr5 (146-253)||(29585361-29585470)
chr5 (146-253)||(34352395-34352504)
chr5 (146-253)||(41718557-41718666)
chr5 (146-253)||(41723283-41723392)
[»] chr8 (2 HSPs)
chr8 (146-253)||(9439433-9439542)
chr8 (146-253)||(9444153-9444262)


Alignment Details
Target: chr2 (Bit Score: 248; Significance: 1e-137; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 42118016 - 42117689
Alignment:
Q  1 cctctttggcttatttgaaggttgcaaatttgtcacatacgtacagactccaaaaactagaatgttgagttgcatgttcatctttttggtgtgtttggtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42118016 cctctttggcttatttgaaggttgcaaatttgtcacatac----agactccaaaaactagaatgttgagttgcatgttcatctttttggtgtgtttggtt 42117921  T
Q  101 gggtactagaacataaatattatcatgaagctgagnnnnnnnnntaactgaacatacaatatttacgtagaaacctctcaataaataagggggaaaacca 200  Q
    |||||||||| |||||||||||| |||||||||||         |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  42117920 gggtactagagcataaatattatgatgaagctgagaaaaaaaa-taactgaacatacaatatttacgtagaaacctctcaattaataaggggaaaaacca 42117822  T
Q  201 cgagataaaagtagataactttcactaaacgagagaaattataagacctctctaaatacgagaaaagacaatttactctctctatggaaataggagaata 300  Q
    ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||    
T  42117821 cgagacaaaagtagataactttcattaaacgagagaaattataagacctctctaaatatgagaaaagacaaattactctctctatggaaataggagtata 42117722  T
Q  301 ctaacctaggagaaactatatttcatctcactc 333  Q
    |||||||||||||||||||||||||||||||||    
T  42117721 ctaacctaggagaaactatatttcatctcactc 42117689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 28716013 - 28715937
Alignment:
Q  149 tgaacatacaatatttacgtagaaacctctcaataaataagggggaaaaccacgagataaaagtagataactttcac 225  Q
    |||||| ||||||||||||| |||||| |||| ||||||||||| |||||||| ||| || | |||| |||||||||    
T  28716013 tgaacacacaatatttacgtggaaacccctcattaaataaggggaaaaaccacaagagaagaatagagaactttcac 28715937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 246
Target Start/End: Original strand, 31592976 - 31593071
Alignment:
Q  151 aacatacaata-tttacgtagaaacctctcaataaataagggggaaaaccacgagataaaagtagataactttcactaaacgagagaaattataaga 246  Q
    ||||||||||| ||||||| |||| |||||||||||||||    |||||||| |||||| |||||| |||||||||||| ||| |||||||| ||||    
T  31592976 aacatacaataatttacgtggaaatctctcaataaataagaaaaaaaaccac-agataagagtagagaactttcactaaccgaaagaaattacaaga 31593071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 253
Target Start/End: Original strand, 5198716 - 5198825
Alignment:
Q  146 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 243  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  5198716 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 5198815  T
Q  244 agacctctct 253  Q
     |||||||||    
T  5198816 ggacctctct 5198825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 15603133 - 15603024
Alignment:
Q  146 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 243  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||     |||||||| |    
T  15603133 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtagaagaaattaca 15603034  T
Q  244 agacctctct 253  Q
    ||||||||||    
T  15603033 agacctctct 15603024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 316
Target Start/End: Original strand, 16183692 - 16183868
Alignment:
Q  146 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagaga-aattat 242  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  ||| |||||     
T  16183692 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagacaattac 16183791  T
Q  243 aagacctct--ctaaatacgagaaaagacaatttactctctctatggaaataggagaatactaac-ctaggagaaac 316  Q
    |||||||||  |||||||| || | |||||| |||| |||||| | ||||||||||||||||||| |||||||||||    
T  16183792 aagacctctctctaaatacaaggagagacaaattaccctctctcttgaaataggagaatactaacactaggagaaac 16183868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 146 - 303
Target Start/End: Original strand, 8140025 - 8140185
Alignment:
Q  146 aactgaacatacaatatttacgtagaaacctctcaataaataagggg-gaaaaccacgagataaaagtagataactttcactaaacgagagaaattataa 244  Q
    ||||||||  |||||||||| || |||||| ||||| |||||||||| |||||||| | | ||| | |||| |||||||||| |  |  |||||||||||    
T  8140025 aactgaacgcacaatatttatgtggaaacccctcaacaaataaggggagaaaaccatggggtaagattagaaaactttcactcagtggaagaaattataa 8140124  T
Q  245 gacctctcta--aatacgagaaaagacaatttactctctctatggaaataggagaatacta 303  Q
    |||||||||   ||||| || | |||||| |||| |||||| | |||||||||||||||||    
T  8140125 gacctctctcttaatacaaggagagacaaattaccctctctcttgaaataggagaatacta 8140185  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 303
Target Start/End: Original strand, 8138569 - 8138681
Alignment:
Q  193 gaaaaccacgagataaaagtagataactttcactaaacgagagaaattataagacctc--tctaaatacgagaaaagacaatttactctctctatggaaa 290  Q
    ||||||||||||  || | |||| ||||||||||||| |  |||||||| ||||||||  ||||||||| || | |||||| ||||||||||| | |||     
T  8138569 gaaaaccacgaggcaagattagagaactttcactaaatggaagaaattacaagacctccctctaaatacaaggagagacaaattactctctctcttgaag 8138668  T
Q  291 taggagaatacta 303  Q
    |||||||||||||    
T  8138669 taggagaatacta 8138681  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 224
Target Start/End: Complemental strand, 30235278 - 30235198
Alignment:
Q  146 aactgaacatacaatatttacgtagaaacctctcaataaataagggg--gaaaaccacgagataaaagtagataactttca 224  Q
    ||||||||| ||||||||||||| |||||| |||||  |||||||||   ||||||||| ||||| |||||| ||||||||    
T  30235278 aactgaacacacaatatttacgtggaaacccctcaacgaataaggggaaaaaaaccacgggataagagtagaaaactttca 30235198  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 316
Target Start/End: Complemental strand, 10427536 - 10427360
Alignment:
Q  146 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaacc-acgagataaaagtagataactttcactaaacgagaga-aattat 242  Q
    ||||||||| ||||||||| |||  |||||| ||||| |||||||||| |||| | ||| |  ||||||||||||||||||||||  |  ||| |||||     
T  10427536 aactgaacacacaatattttacgcggaaacccctcaacaaataaggggaaaaaactacggggaaaaagtagataactttcactaagtggaagacaattac 10427437  T
Q  243 aagac--ctctctaaatacgagaaaagacaatttactctctctatggaaataggagaatactaac-ctaggagaaac 316  Q
    |||||  |||||||||||| || | |||||| |||| |||||| | ||||||||||||||||||| |||||||||||    
T  10427436 aagacttctctctaaatacaaggagagacaaattaccctctctcttgaaataggagaatactaacactaggagaaac 10427360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 228
Target Start/End: Original strand, 30950244 - 30950327
Alignment:
Q  146 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaaccacgagataaaagtagataactttcactaa 228  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||  ||||||||| |  || |||||| ||||||||||||    
T  30950244 aactgaacacacaatattttacgtggaaacccctcaacaaataagggaaaaaaccacggggcaagagtagagaactttcactaa 30950327  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 253
Target Start/End: Original strand, 24520086 - 24520195
Alignment:
Q  146 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 243  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  24520086 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 24520185  T
Q  244 agacctctct 253  Q
     |||||||||    
T  24520186 ggacctctct 24520195  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 42266159 - 42266050
Alignment:
Q  146 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 243  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  42266159 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 42266060  T
Q  244 agacctctct 253  Q
     |||||||||    
T  42266059 ggacctctct 42266050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 42270878 - 42270769
Alignment:
Q  146 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 243  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  42270878 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 42270779  T
Q  244 agacctctct 253  Q
     |||||||||    
T  42270778 ggacctctct 42270769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 253
Target Start/End: Original strand, 48701882 - 48701991
Alignment:
Q  146 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 243  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  48701882 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 48701981  T
Q  244 agacctctct 253  Q
     |||||||||    
T  48701982 ggacctctct 48701991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 21515529 - 21515577
Alignment:
Q  156 acaatatttacgtagaaacctctcaataaataagggggaaaaccacgag 204  Q
    ||||||||||| |||||| | |||||||||||||||  |||||||||||    
T  21515529 acaatatttacatagaaatccctcaataaataagggaaaaaaccacgag 21515577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 146 - 329
Target Start/End: Complemental strand, 4130340 - 4130152
Alignment:
Q  146 aactgaacatacaatatttacgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagaga-aattata 243  Q
    ||||||||| |||| |||||||| |||| | ||||| |||||| ||| |||| ||||| |  || |||||| ||||||||||||  |  ||| ||||| |    
T  4130340 aactgaacacacaaaatttacgtggaaatccctcaacaaataaagggaaaaaaccacggggcaagagtagagaactttcactaagtggaagataattaca 4130241  T
Q  244 agac--ctctctaaatacgagaaaagacaatttactctctctatggaaataggagaatactaac-ctaggagaaactatatttcatctc 329  Q
    ||||  |||||||||||| || | |||||| |||| |||||| | ||||||||| ||||||||| ||||||||||||||||||| ||||    
T  4130240 agacttctctctaaatacaaggagagacaaattaccctctctcttgaaataggacaatactaacactaggagaaactatatttcctctc 4130152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 162 - 316
Target Start/End: Complemental strand, 46191470 - 46191311
Alignment:
Q  162 tttacgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagaga-aattataagac--ctctctaaat 257  Q
    ||||||| |||||| ||||| |||||||||| |||| ||||| || || |||||| ||||||||||||  |  ||| ||||| |||||  ||||||||||    
T  46191470 tttacgtggaaacccctcaacaaataaggggaaaaaaccacgggacaagagtagagaactttcactaagtggaagacaattacaagacttctctctaaat 46191371  T
Q  258 acgagaaaagacaatttactctctctatggaaataggagaatactaac-ctaggagaaac 316  Q
    |  || | |||||| |||| |||||| | ||||||||||||||||||| |||||||||||    
T  46191370 agaaggagagacaaattaccctctctcttgaaataggagaatactaacactaggagaaac 46191311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 251
Target Start/End: Original strand, 30697188 - 30697282
Alignment:
Q  158 aatatttacgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattataagacctct 251  Q
    ||||||||||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |||||||||    
T  30697188 aatatttacgtggaaacccctcaacaaataaggggaaaaagccacgtggcaagagtagagaactttcactaagtggaagaaattacaagacctct 30697282  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 21966805 - 21966698
Alignment:
Q  146 aactgaacatacaatatttacgtagaaacctctcaataaataagggggaaaaccacgagataaaagtagataactttcactaaacgagagaaattataag 245  Q
    |||| |||||| |||||||| || |||||| |||||||||||| ||| |||| || | |  || |||||| ||||||||||||| |  ||||||||||||    
T  21966805 aactaaacataaaatatttatgtggaaacccctcaataaataaagggaaaaatcatggggcaagagtagagaactttcactaaatggaagaaattataag 21966706  T
Q  246 acctctct 253  Q
    ||||||||    
T  21966705 acctctct 21966698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 1234957 - 1234848
Alignment:
Q  146 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 243  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  1234957 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 1234858  T
Q  244 agacctctct 253  Q
     |||||||||    
T  1234857 ggacctctct 1234848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 210 - 283
Target Start/End: Original strand, 23012626 - 23012699
Alignment:
Q  210 agtagataactttcactaaacgagagaaattataagacctctctaaatacgagaaaagacaatttactctctct 283  Q
    |||||| ||||||||||||  ||||||||||  ||||||||| ||||||| |  | |||||| |||||||||||    
T  23012626 agtagagaactttcactaagtgagagaaatttcaagacctctttaaatacaatgagagacaaattactctctct 23012699  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 253
Target Start/End: Original strand, 27878770 - 27878879
Alignment:
Q  146 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 243  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  27878770 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 27878869  T
Q  244 agacctctct 253  Q
     |||||||||    
T  27878870 ggacctctct 27878879  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 146 - 197
Target Start/End: Complemental strand, 54546139 - 54546088
Alignment:
Q  146 aactgaacatacaatatttacgtagaaacctctcaataaataagggggaaaa 197  Q
    ||||||||||||||||||||||| |||||| ||||| |||||||||| ||||    
T  54546139 aactgaacatacaatatttacgtggaaacccctcaacaaataaggggaaaaa 54546088  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 316
Target Start/End: Original strand, 24671187 - 24671256
Alignment:
Q  248 ctctctaaatacgagaaaagacaatttactctctctatggaaataggagaatactaac-ctaggagaaac 316  Q
    |||||||||||| || | |||||| |||| |||||| | ||||||||||||||||||| |||||||||||    
T  24671187 ctctctaaatacaaggagagacaaattaccctctctcttgaaataggagaatactaacactaggagaaac 24671256  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 253
Target Start/End: Original strand, 5823336 - 5823445
Alignment:
Q  146 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 243  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  5823336 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 5823435  T
Q  244 agacctctct 253  Q
     |||||||||    
T  5823436 ggacctctct 5823445  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 34360212 - 34360103
Alignment:
Q  146 aactgaacatacaatattt-acgtagaaacctctcaataaataagggg-gaaaaccacgagataaaagtagataactttcactaaacgagagaaattata 243  Q
    ||||||||| ||||||||| ||||||||||| ||||| ||||||||||  ||||||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  34360212 aactgaacacacaatattttacgtagaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 34360113  T
Q  244 agacctctct 253  Q
     |||||||||    
T  34360112 ggacctctct 34360103  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 253
Target Start/End: Original strand, 29585361 - 29585470
Alignment:
Q  146 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 243  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  29585361 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 29585460  T
Q  244 agacctctct 253  Q
     |||||||||    
T  29585461 ggacctctct 29585470  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 34352504 - 34352395
Alignment:
Q  146 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 243  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  34352504 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 34352405  T
Q  244 agacctctct 253  Q
     |||||||||    
T  34352404 ggacctctct 34352395  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 41718666 - 41718557
Alignment:
Q  146 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 243  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  41718666 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 41718567  T
Q  244 agacctctct 253  Q
     |||||||||    
T  41718566 ggacctctct 41718557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 253
Target Start/End: Complemental strand, 41723392 - 41723283
Alignment:
Q  146 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 243  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  41723392 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 41723293  T
Q  244 agacctctct 253  Q
     |||||||||    
T  41723292 ggacctctct 41723283  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 253
Target Start/End: Original strand, 9439433 - 9439542
Alignment:
Q  146 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 243  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  9439433 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 9439532  T
Q  244 agacctctct 253  Q
     |||||||||    
T  9439533 ggacctctct 9439542  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 253
Target Start/End: Original strand, 9444153 - 9444262
Alignment:
Q  146 aactgaacatacaatattt-acgtagaaacctctcaataaataagggggaaaa-ccacgagataaaagtagataactttcactaaacgagagaaattata 243  Q
    ||||||||| ||||||||| |||| |||||| ||||| |||||||||| |||| ||||| |  || |||||| ||||||||||||  |  |||||||| |    
T  9444153 aactgaacacacaatattttacgtggaaacccctcaacaaataaggggaaaaaaccacggggcaagagtagagaactttcactaagtggaagaaattaca 9444252  T
Q  244 agacctctct 253  Q
     |||||||||    
T  9444253 ggacctctct 9444262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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