View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12908_low_1 (Length: 576)

Name: NF12908_low_1
Description: NF12908
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12908_low_1
NF12908_low_1
[»] chr7 (2 HSPs)
chr7 (23-210)||(35443205-35443393)
chr7 (369-559)||(35443538-35443717)
[»] chr4 (1 HSPs)
chr4 (510-549)||(26863129-26863168)
[»] chr5 (2 HSPs)
chr5 (521-559)||(35922124-35922162)
chr5 (455-488)||(6500011-6500044)
[»] chr1 (1 HSPs)
chr1 (511-548)||(12018490-12018527)


Alignment Details
Target: chr7 (Bit Score: 181; Significance: 2e-97; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 35443205 - 35443393
Alignment:
Q  23 acaaacataaaa-aaggtaaagaacaaaggtgattcctttgtttattttcgcaaaattctattctaaatcaacaatgagtgaagtgtatcatatcattag 121  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35443205 acaaacataaaaaaaggtaaagaacaaaggtgattcctttgtttattttcgcaaaattctattctaaatcaacaatgagtgaagtgtatcatatcattag 35443304  T
Q  122 agagaggtcaattaattacctggtcaacatcttgacgagtaataagagtatgcattgcggatccacttgacgtatcgcaaatattagag 210  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35443305 agagaggtcaattaattacctggtcaacatcttgacgagtaataagagtatgcattgcggatccacttgacgtatcgcaaatattagag 35443393  T

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Target: chr7; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 369 - 559
Target Start/End: Original strand, 35443538 - 35443717
Alignment:
Q  369 ataaaattatatattcaaggtacaaaatcaaattatttgactttttgaataaataacatttttatttagatattataattcacagtttgacattttagat 468  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||    
T  35443538 ataaaattatatattcaatgtacaaaatcaaattatttaactttttgaataaataacatttttatttagatattctaattcacagtttgactttttagat 35443637  T
Q  469 ttattagataattgatgtatctaatctgaaatatatgtcaaatatatgtcagatacatcaattatttaatgaatttaaaattttaattgtt 559  Q
    ||||||||||||||||||||||| ||||           ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35443638 ttattagataattgatgtatctagtctg-----------aaatatatgtcagatacatcaattatttaatgaatttaaaattttaattgtt 35443717  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 510 - 549
Target Start/End: Complemental strand, 26863168 - 26863129
Alignment:
Q  510 atatatgtcagatacatcaattatttaatgaatttaaaat 549  Q
    |||||| |||||||||||||||||| ||||||||||||||    
T  26863168 atatatatcagatacatcaattattcaatgaatttaaaat 26863129  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 521 - 559
Target Start/End: Original strand, 35922124 - 35922162
Alignment:
Q  521 atacatcaattatttaatgaatttaaaattttaattgtt 559  Q
    |||||||||||||||||||||||||||| || |||||||    
T  35922124 atacatcaattatttaatgaatttaaaaattcaattgtt 35922162  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 455 - 488
Target Start/End: Original strand, 6500011 - 6500044
Alignment:
Q  455 ttgacattttagatttattagataattgatgtat 488  Q
    |||||||||||||||||||| |||||||||||||    
T  6500011 ttgacattttagatttattaaataattgatgtat 6500044  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 511 - 548
Target Start/End: Original strand, 12018490 - 12018527
Alignment:
Q  511 tatatgtcagatacatcaattatttaatgaatttaaaa 548  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  12018490 tatatttcagatacatcaattatttaatgaatctaaaa 12018527  T

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