View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12909_high_1 (Length: 488)
Name: NF12909_high_1
Description: NF12909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12909_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 14259634 - 14260024
Alignment:
| Q |
1 |
ttgaagatgaatatatttttgatggtgttatgacgaagattatttctatggatttagaaaataatgggtttgtatacaaataactctttgtcagattata |
100 |
Q |
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| T |
14259634 |
ttgaagatgaatatatttttgatggtgttatgacgaagattatttctatggatttagaaaataatgggtttgtatacaaatg-ctctttgtcagattata |
14259732 |
T |
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| Q |
101 |
agcttatgaaatctatatttcatgtaatagtgatatgaaaatgtttttgatatattttagttatcgattcaaatgtattctctatgatcattttgtggat |
200 |
Q |
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| T |
14259733 |
agcttatgaaatctatatttcatgtaatagtgatatgaaaatgtttttggtatattttagttatcgattcaaatgtattctccatgatcattttgtggat |
14259832 |
T |
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| Q |
201 |
gacttgaacgattttatactatctggatcttctgacaatgcatgtgtggtagtttttcttggaaagatcaagttatggaaaggtaagtaattaacagatt |
300 |
Q |
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| T |
14259833 |
gacttgaacgattttatactatctggatcttctgacaatgcatgtgtggtagtttttcttggaaagatcaagttatggaaaggtaagtaattaacagatt |
14259932 |
T |
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| Q |
301 |
tcacaattttactaacaaaggttaagactcatatctaatgtatttaattaaattcagggatacctaccgttcagaatcacggtgcttctacc |
392 |
Q |
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| T |
14259933 |
tcacaattttactaacaaaggttaagactcatatctaatgtatttaattaaattcagggatacctaccgttcagaatcacggtgcttatacc |
14260024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 137 - 286
Target Start/End: Original strand, 14265298 - 14265444
Alignment:
| Q |
137 |
gaaaatgtttttgatatattttagttatcgattcaaatgtattctctatgatcattttgtggatgacttgaacgattttatactatctggatcttctgac |
236 |
Q |
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| T |
14265298 |
gaaaatgtttatggtatattt-agttatcgattcaagtgtattcttcatgaccattttgtagatgacttgaccgattttatacta--tggatcttttgac |
14265394 |
T |
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| Q |
237 |
aatgcatgtgtggtagtttttcttggaaagatcaagttatggaaaggtaa |
286 |
Q |
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| T |
14265395 |
aattcacgtgtggtggtttttcttggaaagatcgagttatggaaatgtaa |
14265444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 387 - 477
Target Start/End: Original strand, 14260093 - 14260183
Alignment:
| Q |
387 |
tctaccgtttatttttattataaacaatgtataaaaagatattannnnnnnnaaaaatctattcaatttattttttatattcaggatgatg |
477 |
Q |
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| T |
14260093 |
tctaccgtttatttttattataaacaatgtataaaaagatattattttttataaaaatctattcaatttattttttatattcaggatgatg |
14260183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 103 - 286
Target Start/End: Complemental strand, 22146235 - 22146052
Alignment:
| Q |
103 |
cttatgaaatctatattt-catgtaatagtgatatgaaaatgtttttgatatattttagttatcgattcaaatgtattctctatgatcattttgtggatg |
201 |
Q |
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| T |
22146235 |
cttataaaatctatattttcacggaatagtaacacgaaaatgattatggtatattt-agataccgattcaagtgtattctccatggccgttttgtggatg |
22146137 |
T |
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| Q |
202 |
acttgaacgattttatactatctggatcttctgacaatgcatgtgtggtagtttttcttggaaagatcaagttatggaaaggtaa |
286 |
Q |
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| T |
22146136 |
acttcaccgattttatactatcaggatcttctgacaatgcatgtgtggtagttttccttggaaagatcaaattatggtaaggtaa |
22146052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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