View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12909_high_16 (Length: 235)

Name: NF12909_high_16
Description: NF12909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12909_high_16
NF12909_high_16
[»] chr4 (2 HSPs)
chr4 (146-225)||(14259578-14259657)
chr4 (18-87)||(14259450-14259519)
[»] chr6 (1 HSPs)
chr6 (20-75)||(6604629-6604684)


Alignment Details
Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 146 - 225
Target Start/End: Original strand, 14259578 - 14259657
Alignment:
Q  146 ctggataagtttgtatcgatttgaagatataatcgggatgctggctaaagttgaggttgaagatgaatatatttttgatg 225  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14259578 ctggataaatttgtatcgatttgaagatataatcgggatgctggctaaagttgaggttgaagatgaatatatttttgatg 14259657  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 14259450 - 14259519
Alignment:
Q  18 attttttgacccatccttcagtttttctttcaaatatttacaaatctgaagttatggttggggagttacg 87  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14259450 attttttgacccatccttcagtttttctttcaaatatttacaaatctgaagttatggttggggagttacg 14259519  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 6604684 - 6604629
Alignment:
Q  20 tttttgacccatccttcagtttttctttcaaatatttacaaatctgaagttatggt 75  Q
    ||||| ||||||||||| |||||||||||||||| |||||| | ||||||||||||    
T  6604684 ttttttacccatccttcggtttttctttcaaatagttacaattatgaagttatggt 6604629  T

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