View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12909_high_3 (Length: 431)

Name: NF12909_high_3
Description: NF12909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12909_high_3
NF12909_high_3
[»] chr5 (9 HSPs)
chr5 (183-412)||(43299703-43299930)
chr5 (3-169)||(19209261-19209427)
chr5 (15-169)||(23737686-23737840)
chr5 (1-89)||(41958735-41958823)
chr5 (100-186)||(43300001-43300085)
chr5 (95-171)||(41959210-41959286)
chr5 (1-63)||(43300092-43300154)
chr5 (86-169)||(32863437-32863520)
chr5 (116-169)||(3173952-3174005)
[»] chr7 (3 HSPs)
chr7 (1-164)||(44660128-44660291)
chr7 (116-169)||(6472522-6472575)
chr7 (116-169)||(9371608-9371661)
[»] chr8 (3 HSPs)
chr8 (1-186)||(43915889-43916073)
chr8 (116-169)||(18068368-18068421)
chr8 (116-169)||(27576549-27576602)
[»] chr6 (2 HSPs)
chr6 (116-169)||(16497455-16497508)
chr6 (218-250)||(33259804-33259836)
[»] chr4 (6 HSPs)
chr4 (116-169)||(8433258-8433311)
chr4 (116-169)||(21604214-21604267)
chr4 (116-169)||(25808916-25808969)
chr4 (116-145)||(38115268-38115297)
chr4 (116-169)||(46164644-46164697)
chr4 (1-49)||(54785339-54785385)
[»] chr3 (1 HSPs)
chr3 (116-169)||(9456202-9456255)
[»] chr1 (4 HSPs)
chr1 (116-169)||(26014314-26014367)
chr1 (116-169)||(26354792-26354845)
chr1 (116-169)||(29599529-29599582)
chr1 (116-169)||(48184027-48184080)
[»] scaffold1300 (1 HSPs)
scaffold1300 (117-145)||(1191-1219)
[»] scaffold0428 (1 HSPs)
scaffold0428 (218-250)||(3892-3924)


Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 183 - 412
Target Start/End: Complemental strand, 43299930 - 43299703
Alignment:
Q  183 aatataaggtgttaatccaatcaatcgtccaaaacagcttatgaaaatagattatagcatataggaaagtggttgagttatacagcttgattcaaatttt 282  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  |     
T  43299930 aatataaggtgttaatccaatcaatcgtccaaaacagcttatgaaaatagattatagcatataggaaagtggttgagttatacagcttgattcatacct- 43299832  T
Q  283 gttgtaaattgaacaagtttaagaaatgggtgttgttaatttcacttagtgaaaatattaacctaaaatgaaataacagtgttccaagttacttgaggaa 382  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43299831 -ttgtaaattgaacaagtttaagaaatgggtgttgttaatttcacttagtgaaaatattaacctaaaatgaaataacagtgttccaagttacttgaggaa 43299733  T
Q  383 tgaatgaatcgaatgcaatgacataccttt 412  Q
    ||||||||||||||||||||||||||||||    
T  43299732 tgaatgaatcgaatgcaatgacataccttt 43299703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 3 - 169
Target Start/End: Original strand, 19209261 - 19209427
Alignment:
Q  3 aggatgcgacggtgatggatgcagaaggaggtgagagtggttgcggcggcggcggtgtggtgaatggagagcggtggtgtggtctgggagaagaaaaaga 102  Q
    ||||||| || |||||||||| |||||||||||| |||||| |||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||    
T  19209261 aggatgcaacagtgatggatggagaaggaggtgatagtggtcgcggcggcggtggtgtggtgaatggagagcggtgcggtggtctgggagaagaaaaaga 19209360  T
Q  103 aaatcgcgtttctgatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatatta 169  Q
    |||||| |||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||    
T  19209361 aaatcgtgtttctgatgaaagagaaagggaaagagaaaatgaagtagaattgggaatacttatatta 19209427  T

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Target: chr5; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 15 - 169
Target Start/End: Complemental strand, 23737840 - 23737686
Alignment:
Q  15 tgatggatgcagaaggaggtgagagtggttgcggcggcggcggtgtggtgaatggagagcggtggtgtggtctgggagaagaaaaagaaaatcgcgtttc 114  Q
    ||||||||| |||||||||||| |||||| |||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||||| |||||    
T  23737840 tgatggatggagaaggaggtgatagtggtcgcggcggcggtggtgtggtgaatggagagcggtgcggtggtctgggagaagaaaaagaaaatcgtgtttc 23737741  T
Q  115 tgatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatatta 169  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  23737740 tgatgaaagagaaagggaaagaggaaatgaagtagaattgggaatactcaaatta 23737686  T

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Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 89
Target Start/End: Original strand, 41958735 - 41958823
Alignment:
Q  1 ggaggatgcgacggtgatggatgcagaaggaggtgagagtggttgcggcggcggcggtgtggtgaatggagagcggtggtgtggtctgg 89  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||    
T  41958735 ggaggatgcgacggtgatggatggagaaggaggtgagagtggttgcggcggcggtggtgaggtgaatggagagcggtggtgtggtctgg 41958823  T

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Target: chr5; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 100 - 186
Target Start/End: Complemental strand, 43300085 - 43300001
Alignment:
Q  100 agaaaatcgcgtttctgatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatattactgagaagggtataata 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  43300085 agaaaatcgcgtttctgatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatattact--gaagggtataata 43300001  T

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Target: chr5; HSP #6
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 41959210 - 41959286
Alignment:
Q  95 gaaaaagaaaatcgcgtttctgatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatattact 171  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  41959210 gaaaaagaagatcgcgtttctgatgaaagagaaagggaaagaggaaatgaagtagaattgggaatactcatattact 41959286  T

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Target: chr5; HSP #7
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 43300154 - 43300092
Alignment:
Q  1 ggaggatgcgacggtgatggatgcagaaggaggtgagagtggttgcggcggcggcggtgtggt 63  Q
    ||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||||    
T  43300154 ggaggatgcgacgttgatggatgcagaaggaggtgagagtgattgcggcggcggtggtgtggt 43300092  T

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Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 32863520 - 32863437
Alignment:
Q  86 ctgggagaagaaaaagaaaatcgcgtttctgatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatatta 169  Q
    ||||||||||||||| |  | ||||  || |||||||||||||||| ||||||||||||| | ||||||| | || ||||||||    
T  32863520 ctgggagaagaaaaaaaggaacgcgcatcagatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatatta 32863437  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 3174005 - 3173952
Alignment:
Q  116 gatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatatta 169  Q
    |||||||||||||||| ||||||||||||| | ||||||| | || ||||||||    
T  3174005 gatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatatta 3173952  T

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Target: chr7 (Bit Score: 140; Significance: 3e-73; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 44660291 - 44660128
Alignment:
Q  1 ggaggatgcgacggtgatggatgcagaaggaggtgagagtggttgcggcggcggcggtgtggtgaatggagagcggtggtgtggtctgggagaagaaaaa 100  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  44660291 ggaggatgagacggtgatggatggagaaggaggtgagagtggttgcggcggcagtggtgtggtgaatggagagcggtggtgtggtctgggagaagaaaaa 44660192  T
Q  101 gaaaatcgcgtttctgatgaaagagaaagggaaagaggaaatgaagtagaattgggattactca 164  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||    
T  44660191 gaaaatcgcgtttctgatgaaagagaaagggaaaggggaaatgaagtagaattgggaatactca 44660128  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 6472522 - 6472575
Alignment:
Q  116 gatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatatta 169  Q
    |||||||||||||||| ||||||||||||| | ||||||| | || ||||||||    
T  6472522 gatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatatta 6472575  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 9371661 - 9371608
Alignment:
Q  116 gatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatatta 169  Q
    |||||||||||||||| ||||||||||||| | ||||||| | || ||||||||    
T  9371661 gatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatatta 9371608  T

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Target: chr8 (Bit Score: 120; Significance: 3e-61; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 43916073 - 43915889
Alignment:
Q  1 ggaggatgcgacggtgatggatgcagaaggaggtgagagtggttgcggcggcggcggtgtggtgaatggagagcggtggtgtggtctgggagaagaaaaa 100  Q
    ||||||||||||||||||||||| |||||||  |||||||||| ||||||| || ||||||||||||||||||||||   ||||||||||||||||||||    
T  43916073 ggaggatgcgacggtgatggatggagaaggaaatgagagtggtcgcggcggtggtggtgtggtgaatggagagcggtacggtggtctgggagaagaaaaa 43915974  T
Q  101 gaaaatcgcgtttctgatgaaagagaaagggaaagagg-aaatgaagtagaattgggattactcatattactgagaagggtataata 186  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| | |||||||||||||  |||||||||||||    
T  43915973 gaaaatcgcgtttctgatgaaagagaaagggaaaaaggaaaatgaagtagaattggaaatactcatattact--gaagggtataata 43915889  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 18068421 - 18068368
Alignment:
Q  116 gatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatatta 169  Q
    |||||||||||||||| ||||||||||||| | ||||||| | || ||||||||    
T  18068421 gatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatatta 18068368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 27576602 - 27576549
Alignment:
Q  116 gatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatatta 169  Q
    |||||||||||||||| ||||||||||||| | ||||||| | || ||||||||    
T  27576602 gatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatatta 27576549  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 16497455 - 16497508
Alignment:
Q  116 gatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatatta 169  Q
    |||||||||||||||| ||||||||||||| | ||||||| | || ||||||||    
T  16497455 gatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatatta 16497508  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 33259836 - 33259804
Alignment:
Q  218 agcttatgaaaatagattatagcatataggaaa 250  Q
    ||||||||||||||| |||||||||||||||||    
T  33259836 agcttatgaaaatagcttatagcatataggaaa 33259804  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 8433258 - 8433311
Alignment:
Q  116 gatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatatta 169  Q
    |||||||||||||||| ||||||||||||| | ||||||| | || ||||||||    
T  8433258 gatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatatta 8433311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 21604267 - 21604214
Alignment:
Q  116 gatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatatta 169  Q
    |||||||||||||||| ||||||||||||| | ||||||| | || ||||||||    
T  21604267 gatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatatta 21604214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 25808916 - 25808969
Alignment:
Q  116 gatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatatta 169  Q
    |||||||||||||||| ||||||||||||| | ||||||| | || ||||||||    
T  25808916 gatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatatta 25808969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 145
Target Start/End: Complemental strand, 38115297 - 38115268
Alignment:
Q  116 gatgaaagagaaagggaaagaggaaatgaa 145  Q
    ||||||||||||||||||||||||||||||    
T  38115297 gatgaaagagaaagggaaagaggaaatgaa 38115268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 46164644 - 46164697
Alignment:
Q  116 gatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatatta 169  Q
    |||||||||||||||| ||||||||||||| | ||||||| | || ||||||||    
T  46164644 gatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatatta 46164697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 54785339 - 54785385
Alignment:
Q  1 ggaggatgcgacggtgatggatgcagaaggaggtgagagtggttgcggc 49  Q
    |||||||||| |||||||||||| ||||||||  |||||||||||||||    
T  54785339 ggaggatgcggcggtgatggatggagaaggag--gagagtggttgcggc 54785385  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 9456255 - 9456202
Alignment:
Q  116 gatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatatta 169  Q
    |||||||||||||||| ||||||||||||| | ||||||| | || ||||||||    
T  9456255 gatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatatta 9456202  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 26014367 - 26014314
Alignment:
Q  116 gatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatatta 169  Q
    |||||||||||||||| ||||||||||||| | ||||||| | || ||||||||    
T  26014367 gatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatatta 26014314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 26354845 - 26354792
Alignment:
Q  116 gatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatatta 169  Q
    |||||||||||||||| ||||||||||||| | ||||||| | || ||||||||    
T  26354845 gatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatatta 26354792  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Original strand, 29599529 - 29599582
Alignment:
Q  116 gatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatatta 169  Q
    |||||||||||||||| ||||||||||||| | ||||||| | || ||||||||    
T  29599529 gatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatatta 29599582  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 48184080 - 48184027
Alignment:
Q  116 gatgaaagagaaagggaaagaggaaatgaagtagaattgggattactcatatta 169  Q
    |||||||||||||||| ||||||||||||| | ||||||| | || ||||||||    
T  48184080 gatgaaagagaaaggggaagaggaaatgaaattgaattggtaatattcatatta 48184027  T

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Target: scaffold1300 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 145
Target Start/End: Original strand, 1191 - 1219
Alignment:
Q  117 atgaaagagaaagggaaagaggaaatgaa 145  Q
    |||||||||||||||||||||||||||||    
T  1191 atgaaagagaaagggaaagaggaaatgaa 1219  T

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Target: scaffold0428 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 3924 - 3892
Alignment:
Q  218 agcttatgaaaatagattatagcatataggaaa 250  Q
    ||||||||||||||| |||||||||||||||||    
T  3924 agcttatgaaaatagcttatagcatataggaaa 3892  T

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