View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12909_high_4 (Length: 430)
Name: NF12909_high_4
Description: NF12909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12909_high_4 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 25 - 430
Target Start/End: Original strand, 5051458 - 5051873
Alignment:
| Q |
25 |
tgaaaatccaacaattctcgaatataaggatgattt-atcttgttatattgctgagtttaaggtcgaatgttcagcccagaaaactctaggaaatttggt |
123 |
Q |
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| T |
5051458 |
tgaaaatccaacaattctcgaatataaggatgattttatcttgttatattgtcgagtttagggtcgaattttcagcccagaaaactctaggaaatttggt |
5051557 |
T |
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| Q |
124 |
ttgcaggagtagaaagatggagattggatgacaacgatacgaggagtttatgctttgagataaaattgaagtgctacttttctggtt---ttcttctttc |
220 |
Q |
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| T |
5051558 |
ttgcaggagtagaaagatggagattggatgagaaccatacgaggagtttacgctttgagataaaattgaagtgctacttttctggttttcttcttctttc |
5051657 |
T |
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| Q |
221 |
atttgttggaccaaagtatattggtgatgaaaaactgatcgttcattgaattggagctgtgagat------taagaagcgctttgcgatggatttgcatc |
314 |
Q |
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| T |
5051658 |
atttgttggaccaaagtatattggtgatgaagaactggccgttcattgaattggagctgtgagattattgctaagaagcgctttgcgatggatttgcatc |
5051757 |
T |
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| Q |
315 |
tcactcctgtcttgtatggacacgactccatatctccatccatatatcatctgataagttctccatgttgattgtggtatatattgctaatggattgtat |
414 |
Q |
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| T |
5051758 |
tcactcctgtcttgtatggacacgactccatatctccatccatatatcatctgataagttctccatgttgattgtagtatatattgctaatagattgtat |
5051857 |
T |
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| Q |
415 |
gttcacgagctattac |
430 |
Q |
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| T |
5051858 |
gttcacgagctattac |
5051873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 146; Significance: 9e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 16 - 403
Target Start/End: Complemental strand, 51273919 - 51273522
Alignment:
| Q |
16 |
caagccatttgaaaatccaacaattctcgaatataagg-atgatttat-cttgttatattgctgagtttaaggtcgaatgttcagcccagaaaactctag |
113 |
Q |
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| T |
51273919 |
caagccatttgaaaatccgacaattctcgaatataagacatgtttttttcttgttatattgtcaagtttaggatcgaattttcggccaagaaaacacaat |
51273820 |
T |
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| Q |
114 |
gaaatttggtttgcaggagtagaaagatggagattggatgacaacgatacgaggagtttatgctttgagataaaattgaagtgcta-cttttctggtttt |
212 |
Q |
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| T |
51273819 |
gaaatttgattttcaggagtagaaagattgagatttggtgagaacgaaatgagaagtttacgctttgagataaaattgaagtgccattttttctggtttt |
51273720 |
T |
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| Q |
213 |
c---ttctttcatttgttggaccaaagtatattggtgatgaaaaactgatcgttcattgaattggagctgtgagat------taagaagcgctttgcgat |
303 |
Q |
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| T |
51273719 |
cttgttctttcatttgttggagcaaagta---tggtgatgaagaattgatcgttcaatgaattggagctgtgagattaaagctaagaaacgctttgagat |
51273623 |
T |
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| Q |
304 |
ggatttgcatctcactcctgtcttgtatg-gacacgactccatatctccatccatatatcatctgataagttctccatgttgattgtggtatatattgct |
402 |
Q |
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| T |
51273622 |
ggatttgcaactcactgctgtcttgtacgaaacacgactccatatctctatcaataaatcatctgataaattctccatgttgattttagtatatattgct |
51273523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 16 - 160
Target Start/End: Complemental strand, 14907948 - 14907802
Alignment:
| Q |
16 |
caagccatttgaaaatccaacaattctcgaatataagg-atgat-ttatcttgttatattgctgagtttaaggtcgaatgttcagcccagaaaactctag |
113 |
Q |
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| T |
14907948 |
caagccattggaagatccaacaattctcgaatataagacattttattttcttgttatattgtcgagtttagggtcgaattttcggcaaagaaaactcaag |
14907849 |
T |
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| Q |
114 |
gaaatttggtttgcaggagtagaaagatggagattggatgacaacga |
160 |
Q |
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| T |
14907848 |
taaatttggttttcaggagtagaaagattgagattgggtgagaacga |
14907802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 286 - 403
Target Start/End: Complemental strand, 14907717 - 14907599
Alignment:
| Q |
286 |
taagaagcgctttgcgatggatttgcatctcactcctgtcttgtatgga-cacgactccatatctccatccatatatcatctgataagttctccatgttg |
384 |
Q |
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| T |
14907717 |
taagatgcgctttgagatggatttgtaactcactgatgttttgtatgaaacacgaatccatgtctctatcaataaatcatctgataaattctccatgttg |
14907618 |
T |
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| Q |
385 |
attgtggtatatattgcta |
403 |
Q |
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| T |
14907617 |
atttaagtatatattgcta |
14907599 |
T |
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