View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12909_high_9 (Length: 342)
Name: NF12909_high_9
Description: NF12909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12909_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 306; Significance: 1e-172; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 8 - 328
Target Start/End: Complemental strand, 37937928 - 37937605
Alignment:
| Q |
8 |
tccaatgatcccagtcaaccccttcttctacgttatttgatcgaaaacacaaaacagagagctgagttattcatcattcttagaaaacaaagacaaagat |
107 |
Q |
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| T |
37937928 |
tccaatgatcccagtcaaccccttcttctacgttatttgatcgaaaacacaaaacagagagctgagttattcatcattcttagaaaacaaagacaaagat |
37937829 |
T |
|
| Q |
108 |
ga---aaccagagacagtaacattggtgctggtgaatctagcaggtattatggaacgagccgatgaatcattgttacctggagtatacaaagaagtcggt |
204 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37937828 |
gatgaaaccagagacagtaacattggtgctggtgaatctagcaggtattatggaacgagccgatgaatcattgttacctggagtatacaaagaagtcggt |
37937729 |
T |
|
| Q |
205 |
gctgctcttaacgctgaccccaccgccttaggttctctcactcttttccgatcacttgttcaatcattctgttaccctcttgctacttacctcgccaccc |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37937728 |
gctgctcttaacgctgaccccaccgccttaggttctctcactcttttccgatcacttgttcaatcattctgttaccctcttgctacttacctcgccaccc |
37937629 |
T |
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| Q |
305 |
gttacaatcgtgcacatgttattg |
328 |
Q |
| |
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||||||||||| |||||||||||| |
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| T |
37937628 |
gttacaatcgttcacatgttattg |
37937605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 71 - 328
Target Start/End: Complemental strand, 37922591 - 37922331
Alignment:
| Q |
71 |
gagttattcatcattcttagaaaacaaagacaaagatga---aaccagagacagtaacattggtgctggtgaatctagcaggtattatggaacgagccga |
167 |
Q |
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|||||||||||||| | |||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||||||||||||||| |||| || |
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| T |
37922591 |
gagttattcatcatccatagaaaacaaagacaaagatgatgaaaccagagacagtaacattggtactggtaaatctagcaggtattatggagagagctga |
37922492 |
T |
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| Q |
168 |
tgaatcattgttacctggagtatacaaagaagtcggtgctgctcttaacgctgaccccaccgccttaggttctctcactcttttccgatcacttgttcaa |
267 |
Q |
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||| ||||||||||| |||||||||||||| | |||| || || ||||||||||| || || |||||||||||||||||||||||||| || |||||| |
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| T |
37922491 |
tgagtcattgttaccaggagtatacaaagagattggtgatgaactcaacgctgacccaactgcgttaggttctctcactcttttccgatccctggttcaa |
37922392 |
T |
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| Q |
268 |
tcattctgttaccctcttgctacttacctcgccacccgttacaatcgtgcacatgttattg |
328 |
Q |
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|||||||||||||||||||| ||||||| ||||| || |||||||||||||||| |||| |
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| T |
37922391 |
gcattctgttaccctcttgctgcttaccttgccacacgacacaatcgtgcacatgtcattg |
37922331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 102 - 328
Target Start/End: Complemental strand, 37926140 - 37925914
Alignment:
| Q |
102 |
aaagatgaaaccagagacagtaacattggtgctggtgaatctagcaggtattatggaacgagccgatgaatcattgttacctggagtatacaaagaagtc |
201 |
Q |
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||||||||| |||||||| | |||||||||||||| ||||||||| |||||||| | |||| ||||| |||||| | || |||||||||||||| || |
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| T |
37926140 |
aaagatgaaggcagagacattgacattggtgctggtaaatctagcaagtattatgcagagagctgatgagtcattgcttccaggagtatacaaagaggtt |
37926041 |
T |
|
| Q |
202 |
ggtgctgctcttaacgctgaccccaccgccttaggttctctcactcttttccgatcacttgttcaatcattctgttaccctcttgctacttacctcgcca |
301 |
Q |
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||||||| ||||||||||| || || || |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||| |||| |
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| T |
37926040 |
ggtgctgaacttaacgctgatccaactgcgttaggttccctcactcttttccgatcccttgttcaatcattctgttaccctctggctgcttacctggcca |
37925941 |
T |
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| Q |
302 |
cccgttacaatcgtgcacatgttattg |
328 |
Q |
| |
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| || ||||||||||||||||||||| |
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| T |
37925940 |
cgcgacacaatcgtgcacatgttattg |
37925914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 103 - 213
Target Start/End: Original strand, 26285037 - 26285147
Alignment:
| Q |
103 |
aagatgaaaccagagacagtaacattggtgctggtgaatctagcaggtattatggaacgagccgatgaatcattgttacctggagtatacaaagaagtcg |
202 |
Q |
| |
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||||||||| |||| ||| ||||| | || ||||||||||||| || || |||||| ||| || |||||||| | ||||| |||||||||||||| | |
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| T |
26285037 |
aagatgaaatcagaaacattaacacttgttttggtgaatctagctggaataatggaaaaagcagacgaatcattacttcctggtgtatacaaagaagttg |
26285136 |
T |
|
| Q |
203 |
gtgctgctctt |
213 |
Q |
| |
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||||||||||| |
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| T |
26285137 |
gtgctgctctt |
26285147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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