View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12909_low_1 (Length: 697)
Name: NF12909_low_1
Description: NF12909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12909_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 4885338 - 4885073
Alignment:
| Q |
14 |
agaagaaatcagtggcagcatcaaagcaagtgaaatcatgaaaacatacccaaaacatgttctcaagaaaccttcttcaccttcaacacaagatggcgga |
113 |
Q |
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| T |
4885338 |
agaagaaatcagtggcagcatcaaagcaagtgaaatcatgaaaacatacccaaaacatgttctcaagaaaccttcttcaccttcaacacaagatggcggt |
4885239 |
T |
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| Q |
114 |
gttgttcctaagatcgttgttgtccctcccgatgctgatcttcaacgcggtaagatttacttcctcatgcctctccctacaccgccaccaccggataaaa |
213 |
Q |
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| T |
4885238 |
gttgttcctaagatcgttgttgtccctcccgatgctgatcttcaacgcggtaagatttacttcctcatgcctctccctacgccgccaccaccggataaaa |
4885139 |
T |
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| Q |
214 |
ataatcaccgtcatagcaaaaactcgtcggtaagaaagaaaagaaaagaacaaaacgagagaatat |
279 |
Q |
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| T |
4885138 |
ataatcaccgtcatagcaaaaactcgtcggtaagaaagaaaagaaaagaacaaaacgagagaatat |
4885073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 339 - 491
Target Start/End: Complemental strand, 4885013 - 4884861
Alignment:
| Q |
339 |
gctacgttggttgtgtcttctgatcagtacttgactgagattctgtctgagaaggtttgtagtcagagagatagaagaagaggacgtgttgctgtgtgga |
438 |
Q |
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| T |
4885013 |
gctacgttggttgtttcttctgatcagtacttgactgagattctgtctgagaaggtttgtagtcagagagacagaagaagaggacgtgttgctgtgtgga |
4884914 |
T |
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| Q |
439 |
gacctcatttggagagtatttctgagtcaccaacaaatcatctataacggttg |
491 |
Q |
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| T |
4884913 |
gacctcatttggagagtatttctgagtcaccaacaaatcatctataacggttg |
4884861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 612 - 680
Target Start/End: Complemental strand, 4884739 - 4884671
Alignment:
| Q |
612 |
gtaaagaagaaaataaactttgtttctgtcaattttgtgtacatatggttaaaattttagtgctatgat |
680 |
Q |
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| T |
4884739 |
gtaaagaagaaaataaactttgtttctgtcaattttgtgtacatatggttaaaattttagtgctatgat |
4884671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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