View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12909_low_12 (Length: 302)
Name: NF12909_low_12
Description: NF12909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12909_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 17 - 288
Target Start/End: Complemental strand, 8807513 - 8807242
Alignment:
| Q |
17 |
aaataggttcacaaaactatcccattttggaattcttttcagatggtttgttagtagactttccaggaacctcatcgtgtcgacagtacaacgatttgaa |
116 |
Q |
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| T |
8807513 |
aaataggttcacaaaactatcccattttggaattcttttcagatggtttgttagtagactttccaggaacctcatcgtgtcgacagtacaacgatttgaa |
8807414 |
T |
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| Q |
117 |
ttcatttggtgagaggagttttgatggaagaaactactttggtgtatcagttgataatgttgttggtctgtatgattgtgaagattcttcactttgtaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8807413 |
ttcatttggtgagaggagttttgatggaagaaactactttggtgtatcagttgataatgttgttggtctgtatgattgtgaagattcttcactttgtaaa |
8807314 |
T |
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| Q |
217 |
gcagattgtgaaacagttaaccttcctggttgtgatggaagtgttggtggtggttctcttggatgttgttat |
288 |
Q |
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| T |
8807313 |
gcagattgtgaaacagttaatcttcctggttgtgatggaagtgttggtggtggttctcttggatgttgttat |
8807242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 17 - 262
Target Start/End: Complemental strand, 22923914 - 22923667
Alignment:
| Q |
17 |
aaataggttcacaaaactatcccattttggaattcttttcagatggtttgttagtagactttccagga-acctcatcgtgtcgacagtacaacgatttga |
115 |
Q |
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||||||||||||||||||||| || ||| ||||||| | |||| ||||||||||||||||| |||| || || || ||||||| ||||||||||||| |
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| T |
22923914 |
aaataggttcacaaaactatcttatcttgaaattcttcttagattgtttgttagtagactttt-aggatacatcgtcatgtcgacgatacaacgatttga |
22923816 |
T |
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| Q |
116 |
attcatttggtgagaggagttttgatggaagaaactac--tttggtgtatcagttgataatgttgttggtctgtatgattgtgaagattcttcactttgt |
213 |
Q |
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||| ||||| |||||||||||||||| || ||| | |||||||| | |||||||||| |||||| ||| | ||||||||||| ||||||||||||| |
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| T |
22923815 |
atttatttgaagagaggagttttgatgaaaaaaaaatcaatttggtgtcttagttgataattttgttgctctctgtgattgtgaaggttcttcactttgt |
22923716 |
T |
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| Q |
214 |
aaagcagattgtgaaacagttaaccttcctggttgtgatggaagtgttg |
262 |
Q |
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|||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
22923715 |
aaagcaaattgcgaaacagttaaccttcctggttgtgatggaagtgttg |
22923667 |
T |
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