View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12909_low_15 (Length: 244)

Name: NF12909_low_15
Description: NF12909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12909_low_15
NF12909_low_15
[»] chr7 (4 HSPs)
chr7 (1-232)||(44660385-44660617)
chr7 (4-44)||(6472244-6472284)
chr7 (4-44)||(9371886-9371926)
chr7 (4-44)||(21358022-21358062)
[»] chr5 (7 HSPs)
chr5 (1-232)||(43300250-43300482)
chr5 (1-232)||(41958410-41958641)
chr5 (4-232)||(23737961-23738192)
chr5 (4-232)||(19208921-19209152)
chr5 (127-225)||(28450488-28450587)
chr5 (4-59)||(3174243-3174298)
chr5 (4-44)||(32863723-32863763)
[»] chr8 (8 HSPs)
chr8 (4-232)||(43916180-43916409)
chr8 (4-59)||(1668184-1668239)
chr8 (4-59)||(16658899-16658954)
chr8 (4-59)||(22014914-22014969)
chr8 (4-59)||(38521211-38521266)
chr8 (4-44)||(780362-780402)
chr8 (4-44)||(22432291-22432331)
chr8 (4-44)||(29182575-29182615)
[»] chr4 (9 HSPs)
chr4 (4-59)||(21355946-21356001)
chr4 (4-59)||(13740237-13740292)
chr4 (4-59)||(23218205-23218260)
chr4 (4-49)||(45144051-45144096)
chr4 (4-49)||(45152820-45152865)
chr4 (4-44)||(8432980-8433020)
chr4 (4-44)||(21604505-21604545)
chr4 (4-44)||(46164366-46164406)
chr4 (4-44)||(47825987-47826027)
[»] scaffold1300 (1 HSPs)
scaffold1300 (26-73)||(755-802)
[»] scaffold0393 (1 HSPs)
scaffold0393 (4-59)||(11154-11209)
[»] chr3 (3 HSPs)
chr3 (4-49)||(21239514-21239559)
chr3 (4-49)||(52893510-52893555)
chr3 (4-44)||(9456493-9456533)
[»] chr1 (3 HSPs)
chr1 (15-67)||(20727511-20727562)
chr1 (4-44)||(26355085-26355125)
chr1 (4-44)||(29599251-29599291)
[»] chr2 (2 HSPs)
chr2 (4-59)||(3935357-3935412)
chr2 (4-44)||(25697567-25697607)
[»] chr6 (1 HSPs)
chr6 (4-44)||(32397312-32397352)


Alignment Details
Target: chr7 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 44660385 - 44660617
Alignment:
Q  1 tcgttcaattctgatttttatttaatgattacatgttctttagttgatttcaatgagttttccatctgttgttgttaaacctagttgattagtgaataca 100  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  44660385 tcgttcaattctgatttttctttaatgattacatgttctttagttgatttcaatgagttttccatccgttgttgttaaacctagttgattagtgaataca 44660484  T
Q  101 tttcttgtttgctgtatgaaatgttctgtgaaatgggtcatcaaaa-atttatgaaagtttgtgtctttatgctaaaatggtggttggaaagtgatttag 199  Q
    | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44660485 tgtcttgtttgctgtatgaaatgttctgtgaaatgggtcatcaaaagatttatgaaagtttgtgtctttatgctaaaatggtggttggaaagtgatttag 44660584  T
Q  200 tgtatagtttgtttcatgagttttgcttttgat 232  Q
    |||||||||||||||||||||||||| ||||||    
T  44660585 tgtatagtttgtttcatgagttttgcatttgat 44660617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 6472284 - 6472244
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagt 44  Q
    ||||||||||||| | |||| ||||||||||||||||||||    
T  6472284 ttcaattctgattctgatttgatgattacatgttctttagt 6472244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 9371886 - 9371926
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagt 44  Q
    ||||||||||||| | |||| ||||||||||||||||||||    
T  9371886 ttcaattctgattctgatttgatgattacatgttctttagt 9371926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 21358062 - 21358022
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagt 44  Q
    ||||||||||||| | |||| ||||||||||||||||||||    
T  21358062 ttcaattctgattctgatttgatgattacatgttctttagt 21358022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 232
Target Start/End: Original strand, 43300250 - 43300482
Alignment:
Q  1 tcgttcaattctgatttttatttaatgattacatgttctttagttgatttcaatgagttttccatctgttgttgttaaacctagttgattagtgaataca 100  Q
    ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43300250 tcgttcaattctgatttttctttaatgattacatgttcttttgttgatttcaatgagttttccatctgttgttgttaaacctagttgattagtgaataca 43300349  T
Q  101 tttcttgtttgctgtatgaaatgttctgtgaaatgggtcatc-aaaaatttatgaaagtttgtgtctttatgctaaaatggtggttggaaagtgatttag 199  Q
    | |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  43300350 tgtcttgtttgctgtatgaaatgttctgtgaaatgggtcatcaaaaaatttatgaaagtttgtgtctttacgctaaaatggtggttggaaagtgatttag 43300449  T
Q  200 tgtatagtttgtttcatgagttttgcttttgat 232  Q
    |||||||||||||||||||||||||||||||||    
T  43300450 tgtatagtttgtttcatgagttttgcttttgat 43300482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 41958641 - 41958410
Alignment:
Q  1 tcgttcaattctgatttttatttaatgattacatgttctttagttgatttcaatgagttttccatctgttgttgttaaacctagttgattagtgaataca 100  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  41958641 tcgttcaattctgatttttctttaatgattacatgtt-tttagttgatttcaatgagctttccatatgttgttgttaaacctagttgattagtgaataca 41958543  T
Q  101 tttcttgtttgctgtatgaaatgttctgtgaaatgggtcatca-aaaatttatgaaagtttgtgtctttatgctaaaatggtggttggaaagtgatttag 199  Q
    | ||||| ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41958542 tgtcttgattgctgtatgaaatgttctgtgaaatgggtcatcaaaaaatttatgtaagtttgtgtctttatgctaaaatggtggttggaaagtgatttag 41958443  T
Q  200 tgtatagtttgtttcatgagttttgcttttgat 232  Q
    |||||||||||||||||||||||||| ||||||    
T  41958442 tgtatagtttgtttcatgagttttgcatttgat 41958410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 23737961 - 23738192
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagttgatttcaatgagttttccatctgttgttgttaaacctagttgattagtgaatac--at 101  Q
    ||||| ||||||| || ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |||  ||    
T  23737961 ttcaaatctgattcttctttaatgattacatgttctttagttgattgccatgagttttccatctgttgttgttaaacctagttgattagtgattacatat 23738060  T
Q  102 ttcttgtttgctgtatgaaatgttctgtgaaatgggtcatcaaaaa-tttatgaaagtttgtgtctttatgctaaaatggtggttggaaagtgatttagt 200  Q
     |||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  23738061 gtcttgtttgctgtatgaaatgttctgtgaaataggttatcaaaaagtttatgaaagtctgtgtctttatgctaaaatggtggttggaaagtgatttagt 23738160  T
Q  201 gtatagtttgtttcatgagttttgcttttgat 232  Q
    || |||||| |||| |||||||||| ||||||    
T  23738161 gtgtagtttatttcgtgagttttgcatttgat 23738192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 4 - 232
Target Start/End: Complemental strand, 19209152 - 19208921
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagttgatttcaatgagttttccatctgttgttgttaaacctagttgattagtgaatacattt 103  Q
    ||||| ||||||| |  ||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| | ||||| |    
T  19209152 ttcaaatctgattctgctttaatgattacatgttctttagttgattgccatgagttttccatctgttgttgttaaacctagttgattagttagtacatat 19209053  T
Q  104 --cttgtttgctgtatgaaatgttctgtgaaatgggtcatcaaaaa-tttatgaaagtttgtgtctttatgctaaaatggtggttggaaagtgatttagt 200  Q
      || |||||||||||||||||||||||||||| ||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19209052 gtctagtttgctgtatgaaatgttctgtgaaataggctatcaaaaaatttatgaaagtttgtgtctttatgctaaaatggtggttggaaagtgatttagt 19208953  T
Q  201 gtatagtttgtttcatgagttttgcttttgat 232  Q
    || |||||| |||| |||||||||| ||||||    
T  19208952 gtgtagtttatttcgtgagttttgcatttgat 19208921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 127 - 225
Target Start/End: Original strand, 28450488 - 28450587
Alignment:
Q  127 tgtgaaatgggtcatcaaa-aatttatgaaagtttgtgtctttatgctaaaatggtggttggaaagtgatttagtgtatagtttgtttcatgagttttgc 225  Q
    ||||||||||||||||||| ||||||||||||||| | |||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  28450488 tgtgaaatgggtcatcaaagaatttatgaaagtttatatctttaggctaaaatggtggttggaaagtgatttagttaatagtttgtttcatgagttttgc 28450587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 3174243 - 3174298
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagttgatttcaatgagtt 59  Q
    ||||||| ||||| | |||| ||||||||||||||||||||||||||| |||||||    
T  3174243 ttcaattatgattatgatttgatgattacatgttctttagttgatttccatgagtt 3174298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 32863723 - 32863763
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagt 44  Q
    ||||||||||||| | |||| ||||||||||||||||||||    
T  32863723 ttcaattctgattctgatttgatgattacatgttctttagt 32863763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 154; Significance: 8e-82; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 4 - 232
Target Start/End: Original strand, 43916180 - 43916409
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagttgatttcaatgagttttccatctgttgttgttaaacctagttgattagtgaatacattt 103  Q
    ||||| ||||||| || ||||| |||| |||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| ||||| |    
T  43916180 ttcaaatctgattcttctttaacgattgcatgttatttagttgattgccatgagttttccatctgttgttgttaaacctagttgattagtgattacatgt 43916279  T
Q  104 cttgtttgctgtatgaaatgttctgtgaaatgggtcatcaa-aaatttatgaaagtttgtgtctttatgctaaaatggtggttggaaagtgatttagtgt 202  Q
    |||||||||||||||||||||||||||||||||||||| ||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43916280 cttgtttgctgtatgaaatgttctgtgaaatgggtcataaatttttttatgaaagtttgtgtctttatgctaaaatggtggttggaaagtgatttagtgt 43916379  T
Q  203 atagtttgtttcatgagttttgcttttgat 232  Q
    | | ||||||||||||||||||| ||||||    
T  43916380 acaatttgtttcatgagttttgcatttgat 43916409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 1668184 - 1668239
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagttgatttcaatgagtt 59  Q
    ||||||| ||||| | |||| ||||||||||||||||||||||||| | |||||||    
T  1668184 ttcaattatgattatgatttgatgattacatgttctttagttgattgccatgagtt 1668239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 16658899 - 16658954
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagttgatttcaatgagtt 59  Q
    ||||||| ||||| | |||| ||||||||||||||||||||||||| | |||||||    
T  16658899 ttcaattatgattatgatttgatgattacatgttctttagttgattgccatgagtt 16658954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 22014914 - 22014969
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagttgatttcaatgagtt 59  Q
    ||||||| ||||| || ||| |||||||||| |||||||||||||||| |||||||    
T  22014914 ttcaattatgattattgtttgatgattacatattctttagttgatttccatgagtt 22014969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 38521266 - 38521211
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagttgatttcaatgagtt 59  Q
    ||||||| ||||| | |||| ||||||||||||||||||||||||| | |||||||    
T  38521266 ttcaattatgattatgatttgatgattacatgttctttagttgattgccatgagtt 38521211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 780402 - 780362
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagt 44  Q
    ||||||||||||| | |||| ||||||||||||||||||||    
T  780402 ttcaattctgattctgatttgatgattacatgttctttagt 780362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 22432331 - 22432291
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagt 44  Q
    ||||||||||||| | |||| ||||||||||||||||||||    
T  22432331 ttcaattctgattctgatttgatgattacatgttctttagt 22432291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 29182615 - 29182575
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagt 44  Q
    ||||||||||||| | |||| ||||||||||||||||||||    
T  29182615 ttcaattctgattctgatttgatgattacatgttctttagt 29182575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 21355946 - 21356001
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagttgatttcaatgagtt 59  Q
    ||||||||||||| | |||| ||||||||||||||||||||||||||| |||||||    
T  21355946 ttcaattctgattctgatttgatgattacatgttctttagttgatttccatgagtt 21356001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 13740292 - 13740237
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagttgatttcaatgagtt 59  Q
    ||||||| ||||| | |||| ||||||||||||||||||||||||||| |||||||    
T  13740292 ttcaattatgattatgatttgatgattacatgttctttagttgatttccatgagtt 13740237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 23218260 - 23218205
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagttgatttcaatgagtt 59  Q
    ||||||| ||||| | |||| ||||||||||||||||||||||||| | |||||||    
T  23218260 ttcaattatgattatgatttgatgattacatgttctttagttgattgccatgagtt 23218205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 45144051 - 45144096
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagttgatt 49  Q
    ||||||| ||||| | |||| |||||||||||||||||||||||||    
T  45144051 ttcaattatgattatgatttgatgattacatgttctttagttgatt 45144096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 45152820 - 45152865
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagttgatt 49  Q
    ||||||| ||||| | |||| |||||||||||||||||||||||||    
T  45152820 ttcaattatgattatgatttgatgattacatgttctttagttgatt 45152865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 8433020 - 8432980
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagt 44  Q
    ||||||||||||| | |||| ||||||||||||||||||||    
T  8433020 ttcaattctgattctgatttgatgattacatgttctttagt 8432980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 21604505 - 21604545
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagt 44  Q
    ||||||||||||| | |||| ||||||||||||||||||||    
T  21604505 ttcaattctgattctgatttgatgattacatgttctttagt 21604545  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 46164406 - 46164366
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagt 44  Q
    ||||||||||||| | |||| ||||||||||||||||||||    
T  46164406 ttcaattctgattctgatttgatgattacatgttctttagt 46164366  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 47825987 - 47826027
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagt 44  Q
    ||||||||||||| | |||| ||||||||||||||||||||    
T  47825987 ttcaattctgattctgatttgatgattacatgttctttagt 47826027  T

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Target: scaffold1300 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1300
Description:

Target: scaffold1300; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 802 - 755
Alignment:
Q  26 tgattacatgttctttagttgatttcaatgagttttccatctgttgtt 73  Q
    |||||||||||||||||||||||| | ||||||||||||||| |||||    
T  802 tgattacatgttctttagttgattaccatgagttttccatctattgtt 755  T

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Target: scaffold0393 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0393
Description:

Target: scaffold0393; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 11209 - 11154
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagttgatttcaatgagtt 59  Q
    ||||||| ||||| | |||| ||||||||||||||||||||||||||| |||||||    
T  11209 ttcaattatgattatgatttgatgattacatgttctttagttgatttccatgagtt 11154  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 21239514 - 21239559
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagttgatt 49  Q
    ||||||||||||| | |||| |||||||||||||||||||||||||    
T  21239514 ttcaattctgattatgatttgatgattacatgttctttagttgatt 21239559  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 4 - 49
Target Start/End: Original strand, 52893510 - 52893555
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagttgatt 49  Q
    ||||||| ||||| | |||| |||||||||||||||||||||||||    
T  52893510 ttcaattatgattatgatttgatgattacatgttctttagttgatt 52893555  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 9456493 - 9456533
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagt 44  Q
    ||||||||||||| | |||| ||||||||||||||||||||    
T  9456493 ttcaattctgattctgatttgatgattacatgttctttagt 9456533  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 67
Target Start/End: Original strand, 20727511 - 20727562
Alignment:
Q  15 tttttatttaatgattacatgttctttagttgatttcaatgagttttccatct 67  Q
    ||||||||| |||||||||||||||||| |||||| | |||||||||||||||    
T  20727511 tttttatttgatgattacatgttcttta-ttgattgccatgagttttccatct 20727562  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 26355085 - 26355125
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagt 44  Q
    ||||||||||||| | |||| ||||||||||||||||||||    
T  26355085 ttcaattctgattctgatttgatgattacatgttctttagt 26355125  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 29599291 - 29599251
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagt 44  Q
    ||||||||||||| | |||| ||||||||||||||||||||    
T  29599291 ttcaattctgattctgatttgatgattacatgttctttagt 29599251  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 59
Target Start/End: Complemental strand, 3935412 - 3935357
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagttgatttcaatgagtt 59  Q
    ||||||| ||||| | |||| ||||||||||||||||||||||||| | |||||||    
T  3935412 ttcaattatgattataatttgatgattacatgttctttagttgattgccatgagtt 3935357  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 25697607 - 25697567
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagt 44  Q
    ||||||||||||| | |||| ||||||||||||||||||||    
T  25697607 ttcaattctgattctgatttgatgattacatgttctttagt 25697567  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Original strand, 32397312 - 32397352
Alignment:
Q  4 ttcaattctgatttttatttaatgattacatgttctttagt 44  Q
    ||||||||||||| | |||| ||||||||||||||||||||    
T  32397312 ttcaattctgattctgatttgatgattacatgttctttagt 32397352  T

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