View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12909_low_3 (Length: 469)
Name: NF12909_low_3
Description: NF12909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12909_low_3 |
 | |
|
| [»] scaffold0249 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 412; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 16 - 450
Target Start/End: Complemental strand, 11168608 - 11168173
Alignment:
| Q |
16 |
acatcatcatgatcatactaaataacttgagctcctctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11168608 |
acatcatcatgatcatactaaataacttgagctcctctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
11168509 |
T |
|
| Q |
116 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattcaagctcagtgatcgcattgatttatattcttctaaatccacgattg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11168508 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattcaaactcagtgatcgcattgatttatattcttctaaatccacgattg |
11168409 |
T |
|
| Q |
216 |
tgatcacattttcaaaatatctgattgcttcctttttatcaaaa-atatttgaacttgctaaggaaagtcaatgctacaatttaggcattgtactttcta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11168408 |
tgatcacattttcaaaatatctgattgcttactttttatcaaaacatatttgaacttgctaaggaaagtccatgctacaatttaggcattgtactttcta |
11168309 |
T |
|
| Q |
315 |
ttctgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaactgtaataaattc |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11168308 |
ttctgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaaatgtaataaattc |
11168209 |
T |
|
| Q |
415 |
agtgcaggtagaatgtaataattcattagtgcttag |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
11168208 |
agtgcaggtagaatgtaataattcattagtgcttag |
11168173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 16 - 170
Target Start/End: Complemental strand, 11207352 - 11207198
Alignment:
| Q |
16 |
acatcatcatgatcatactaaataacttgagctcctctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11207352 |
acatcatcatgatcatactaaataacttgagctcctctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
11207253 |
T |
|
| Q |
116 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattca |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11207252 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattca |
11207198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 8743687 - 8743728
Alignment:
| Q |
66 |
aattaacagtcacaggctccaatataattcataaattgcttt |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8743687 |
aattaacagtcacaggctccaatataattcataaattgcttt |
8743728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0249 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: scaffold0249
Description:
Target: scaffold0249; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 16 - 450
Target Start/End: Complemental strand, 19498 - 19063
Alignment:
| Q |
16 |
acatcatcatgatcatactaaataacttgagctcctctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19498 |
acatcatcatgatcatactcaataacttgagctccactacactacaccagaattaacagtcacaggctccgatataattcataaattgcttttggttttt |
19399 |
T |
|
| Q |
116 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattcaagctcagtgatcgcattgatttatattcttctaaatccacgattg |
215 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19398 |
tagtgtatcaaaaaacaaaatttatgaaggattgacagtgacaaatccttattcaagctcagcaatcgcattgatttatactcttctaaatccacgattg |
19299 |
T |
|
| Q |
216 |
tgatcacattttcaaaatatctgattgcttcctttttatcaaaa-atatttgaacttgctaaggaaagtcaatgctacaatttaggcattgtactttcta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19298 |
tgatcacattttcaaaatatctgattgctttctttttatcaaaacatatttgaacttgctaaggaaagtccatgctacaatttaggcattgtactttcta |
19199 |
T |
|
| Q |
315 |
ttctgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaactgtaataaattc |
414 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19198 |
ttctgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaattgtaataaattc |
19099 |
T |
|
| Q |
415 |
agtgcaggtagaatgtaataattcattagtgcttag |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
19098 |
agtgcaggtagaatgtaataattcattagtgcttag |
19063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 16 - 450
Target Start/End: Complemental strand, 13624011 - 13623574
Alignment:
| Q |
16 |
acatcatcatgatcatactaaataacttgagctcctctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
115 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13624011 |
acatcatcatgatcatactcaataacttgacctcctctacactacatgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
13623912 |
T |
|
| Q |
116 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattcaagctcagtgatcgcattgatttatattcttctaaatccacgattg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13623911 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattcaagctcagcgatcgcattgatttatactcttctaaatccacgattg |
13623812 |
T |
|
| Q |
216 |
tgatcacattttcaaaatatctgattgcttcctttttatcaaaa-atatttgaacttgctaaggaaagtcaatgctacaa--tttaggcattgtactttc |
312 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
13623811 |
ttatcacattttcaaaatatctgattgcttcctttttatcaaaacatatttgaacttgctaaggaaagtccatgctacaatttttaggcattgtactttc |
13623712 |
T |
|
| Q |
313 |
tattctgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaactgtaataaat |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
13623711 |
tattctgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttattaatcaagtgtaataaat |
13623612 |
T |
|
| Q |
413 |
tcagtgcaggtagaatgtaataattcattagtgcttag |
450 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13623611 |
tcagtgcaggtataatgtaataattcattagtgcttag |
13623574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 16 - 450
Target Start/End: Complemental strand, 41050566 - 41050143
Alignment:
| Q |
16 |
acatcatcatgatcatactaaataacttgagctcctctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41050566 |
acatcatcatgatcatactcaataacttgagctccactacactacaccagaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
41050467 |
T |
|
| Q |
116 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattcaagctcagtgatcgcattgatttatattcttctaaatccacgattg |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41050466 |
tagtgtatcacaaaacaacatttatgaaggattgacagtgg--------------agctcagcgatcgcattgatttatactcttctaaatccacgattg |
41050381 |
T |
|
| Q |
216 |
tgatcacattttcaaaatatctgattgcttcctttttatcaaaa-atatttgaacttgctaaggaaagtcaatgctacaattt--aggcattgtactttc |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
41050380 |
tgatcacattttcaaaatatctgattgcttcctttttatcaaaacatatttgaacttgctaaggaaagtccatgctacaatttttaggcattgtactttc |
41050281 |
T |
|
| Q |
313 |
tattctgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaactgtaataaat |
412 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41050280 |
tattccgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaagtgtaataaat |
41050181 |
T |
|
| Q |
413 |
tcagtgcaggtagaatgtaataattcattagtgcttag |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41050180 |
tcagtgcaggtagaatgtaataattcattagtgcttag |
41050143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 16 - 450
Target Start/End: Original strand, 21889828 - 21890247
Alignment:
| Q |
16 |
acatcatcatgatcatactaaataacttgagctcctctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
115 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21889828 |
acatcatcatgatcatactcaataacttgagctccactacactacaccagaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
21889927 |
T |
|
| Q |
116 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattcaagctcagtgatcgcattgatttatattcttctaaatccacgattg |
215 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
21889928 |
tagtgtatctcaaaacaacatttatgaaggattgacagtgg--------------agctcagcgatcacattgatttatactcttctaaatccacgattg |
21890013 |
T |
|
| Q |
216 |
tgatcacattttcaaaatatctgattgcttcctttttatcaaaa-atatttgaacttgctaaggaaagtcaatgctacaatttaggcattgtactttcta |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
21890014 |
tgatcacattttcaaaatatctgattgcttcctttttatcaaaacatatttgaacttgctaaggaaagtccatgctacaat--aggcattgtactttcta |
21890111 |
T |
|
| Q |
315 |
ttctgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaactgtaataaattc |
414 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21890112 |
ttctgtacaatgataattttacttaccgattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaagtgtaataaattc |
21890211 |
T |
|
| Q |
415 |
agtgcaggtagaatgtaataattcattagtgcttag |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
21890212 |
agtgcaggtagaatgtaataattcattagtgcttag |
21890247 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 39585272 - 39585228
Alignment:
| Q |
197 |
tcttctaaatccacgattgtgatcacattttcaaaatatctgatt |
241 |
Q |
| |
|
|||| |||||||| |||| |||||||||||||||||||| ||||| |
|
|
| T |
39585272 |
tcttttaaatccatgattttgatcacattttcaaaatatttgatt |
39585228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 71; Significance: 6e-32; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 348 - 450
Target Start/End: Original strand, 22616072 - 22616174
Alignment:
| Q |
348 |
aaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaactgtaataaattcagtgcaggtagaatgtaataattcattagtgct |
447 |
Q |
| |
|
||||||| |||| |||||||||||||||||| | |||||||||||||||||||| || |||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
22616072 |
aaaatcagaaggaagatacatgttggatgcaatccaaatgagcttgataatcaagtgaaataaattcagtgcaggtagcatgtaatagttcattagtgct |
22616171 |
T |
|
| Q |
448 |
tag |
450 |
Q |
| |
|
||| |
|
|
| T |
22616172 |
tag |
22616174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 66 - 116
Target Start/End: Complemental strand, 1974904 - 1974854
Alignment:
| Q |
66 |
aattaacagtcacaggctccaatataattcataaattgcttttggtttttt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
1974904 |
aattaacagtcacaggctccaatataattcataaattgctttggatttttt |
1974854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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