View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12909_low_7 (Length: 401)
Name: NF12909_low_7
Description: NF12909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12909_low_7 |
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| [»] chr4 (11 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 11)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 31 - 401
Target Start/End: Original strand, 5159249 - 5159620
Alignment:
| Q |
31 |
catttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatattcccataccaatttgtcatctaggattctccaagaattt |
130 |
Q |
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||||| |||||||||||||||| |||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159249 |
cattttctctttgacgcgataggttgccaacttcaatgagtaaatgccatctttatcatattcccataccaatttgtcatctaggattctccaagaattt |
5159348 |
T |
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| Q |
131 |
gagacttcatcttcttgttttgtcatatgcactcnnnnnnnncttgaaattttttaaatagtcaaacataatttgtaaa-nnnnnnnggggaatagttct |
229 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
5159349 |
gagacttcatcttcttgttttgtcatatgcactcaaaaaaaacttgaaattttttaaatagtcaaacataatttgtaaattttttttggggaatagttct |
5159448 |
T |
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| Q |
230 |
tacagatttatttattgaaaattatatctctaactatgtactctc-nnnnnnnnctgcagatgttcaacatttgaaaaacttgaaaatgttaactctaag |
328 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
5159449 |
tacagatttatttattg-aaattatatctctaactatgtactctctttttttttctgcagatgttcaacatttgaaaaacttgaaaatgttaactttaag |
5159547 |
T |
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| Q |
329 |
ctataatcaaatgaatggctcaattcaaggtatgaatactaccaaacacaaataattaattcataactgcttc |
401 |
Q |
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||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5159548 |
ctataatcaaatgaacggctcaattgaaggtatgaatactaccaaacacaaataattaattcataactgcttc |
5159620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 30 - 162
Target Start/End: Original strand, 5181476 - 5181608
Alignment:
| Q |
30 |
ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatattcccataccaatttgtcatctaggattctccaagaatt |
129 |
Q |
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| T |
5181476 |
ccatttcctctttgacgcgataggttgccgacttcaatgagtaaatgccatctttatcatattcccataccaatttctcatctaggattctccaagaatt |
5181575 |
T |
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| Q |
130 |
tgagacttcatcttcttgttttgtcatatgcac |
162 |
Q |
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| T |
5181576 |
tgagatttcatcttcttgttttgtcatatgcac |
5181608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 217 - 401
Target Start/End: Original strand, 5195065 - 5195253
Alignment:
| Q |
217 |
ggggaatagttcttacagatttatttattgaaaattatatctctaactatgtactctcnnnnnnnn----ctgcagatgttcaacatttgaaaaacttga |
312 |
Q |
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| T |
5195065 |
ggggaatagttcttaccgatttatttattgaaaattatatctctaactatgtactctctttttttttcttctgcagatgttcaacatttgaaaaatttga |
5195164 |
T |
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| Q |
313 |
aaatgttaactctaagctataatcaaatgaatggctcaattcaaggtatgaatactaccaaacacaaataattaattcataactgcttc |
401 |
Q |
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| T |
5195165 |
aaatgttaagtttaaacgataatcaaatgaacggctcaattgaaggtatcaatactaccaaacacaaataattaattcataattgcttc |
5195253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 256 - 401
Target Start/End: Original strand, 5181710 - 5181855
Alignment:
| Q |
256 |
tctctaactatgtactctcnnnnnnnnctgcagatgttcaacatttgaaaaacttgaaaatgttaactctaagctataatcaaatgaatggctcaattca |
355 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||| ||||||||| | |
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| T |
5181710 |
tctctaactatgtactctctttttttcctgcagatgttcaacatttgaaaaacttgaaaatgttaagtttaagaaataatcaaatgaacggctcaattga |
5181809 |
T |
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| Q |
356 |
aggtatgaatactaccaaacacaaataattaattcataactgcttc |
401 |
Q |
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| T |
5181810 |
aggtatcaatactaccaaacacaaataattaattcataattgcttc |
5181855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 284 - 389
Target Start/End: Complemental strand, 4843133 - 4843028
Alignment:
| Q |
284 |
tgcagatgttcaacatttgaaaaacttgaaaatgttaactctaagctataatcaaatgaatggctcaattcaaggtatgaatactaccaaacacaaataa |
383 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||| ||||||| ||||||| |||||| |||||| |
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| T |
4843133 |
tgcagatgttcaacatttgaaaaacttgaaaatgttaaggttaagcgataatcaaatgaagggctcaattgaaggtatcaatactatcaaacataaataa |
4843034 |
T |
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| Q |
384 |
ttaatt |
389 |
Q |
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|||||| |
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| T |
4843033 |
ttaatt |
4843028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 284 - 389
Target Start/End: Original strand, 5172489 - 5172594
Alignment:
| Q |
284 |
tgcagatgttcaacatttgaaaaacttgaaaatgttaactctaagctataatcaaatgaatggctcaattcaaggtatgaatactaccaaacacaaataa |
383 |
Q |
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||||||||||||||| |||||||| ||||||||||||| | ||||||||||||||||||| ||||||||| ||||||| ||||||| |||||| |||||| |
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| T |
5172489 |
tgcagatgttcaacacttgaaaaaattgaaaatgttaagtttaagctataatcaaatgaacggctcaattgaaggtatcaatactatcaaacataaataa |
5172588 |
T |
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| Q |
384 |
ttaatt |
389 |
Q |
| |
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|||||| |
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| T |
5172589 |
ttaatt |
5172594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 285 - 384
Target Start/End: Original strand, 5212716 - 5212815
Alignment:
| Q |
285 |
gcagatgttcaacatttgaaaaacttgaaaatgttaactctaagctataatcaaatgaatggctcaattcaaggtatgaatactaccaaacacaaataat |
384 |
Q |
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||||||||||||||||||| ||||||||||||| ||| | || || | ||||||||||| |||||| || ||||||| |||| ||||||||||||||||| |
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| T |
5212716 |
gcagatgttcaacatttgagaaacttgaaaatgctaagtttatgcaacaatcaaatgaacggctcacttgaaggtattaatattaccaaacacaaataat |
5212815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 5194831 - 5194882
Alignment:
| Q |
30 |
ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatc |
81 |
Q |
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| T |
5194831 |
ccatttcctctttgacgcgatagtatgccgacttcaatgagtaaatgccatc |
5194882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 31 - 92
Target Start/End: Complemental strand, 4843339 - 4843278
Alignment:
| Q |
31 |
catttcctctttgacgcgatagtatgccgacttcaatgagtaaatgacatcttaatcatatt |
92 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||| |||||| |||||||| |
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| T |
4843339 |
cattttctctttgacgcgatagtttgccgacttcaatgagtaaatgccatctttatcatatt |
4843278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 96 - 131
Target Start/End: Original strand, 5172339 - 5172374
Alignment:
| Q |
96 |
ataccaatttgtcatctaggattctccaagaatttg |
131 |
Q |
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| T |
5172339 |
ataccaatttgtcatcaaggattctccaagaatttg |
5172374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 273
Target Start/End: Complemental strand, 4843183 - 4843149
Alignment:
| Q |
239 |
atttattgaaaattatatctctaactatgtactct |
273 |
Q |
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|||||||||| |||||||||||||||||||||||| |
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| T |
4843183 |
atttattgaatattatatctctaactatgtactct |
4843149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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