View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12909_low_8 (Length: 365)
Name: NF12909_low_8
Description: NF12909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12909_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 7 - 319
Target Start/End: Complemental strand, 34553550 - 34553238
Alignment:
| Q |
7 |
gagagaagaacacgtttaagcatttgcacagttgttcaagatagtgggcggtgcaaatagtgatgatatttgtttagttatagaggtaaagaggcattgt |
106 |
Q |
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| T |
34553550 |
gagagaagaacacgtttaagcatttgcacagttattcaagatagtgggcggtgcaaatagtgatgatatttgtttaattatagaggta--gaggcattgt |
34553453 |
T |
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| Q |
107 |
atgtatatatgaagagattgattttcttaaatacgtgtttaagcggtgagaaa-gtaaaactatttgatgtaagtgtgttaatcaaccaaaccacttaat |
205 |
Q |
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| T |
34553452 |
atgtatatatgaagagattgattttcttaaatacttgtttaagcggtgagaaaagtaaaactatttgatgtaagtgtgttaatcaaccaaaccacttaat |
34553353 |
T |
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| Q |
206 |
gattaattagaatgatatctttccaccaat-atggtgcagcacaagtcatagaaacctgagatttttaatcatttgaattaatttttggtttgatcttag |
304 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
34553352 |
gattaattagaatgatatctttccaccaattatggtgcagcacaagtcatagaaacctgagatttttaatcatttgaattcatttttggtttgatcttag |
34553253 |
T |
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| Q |
305 |
agataagtgagtatg |
319 |
Q |
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| T |
34553252 |
agataagtgagtatg |
34553238 |
T |
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