View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12909_low_9 (Length: 344)

Name: NF12909_low_9
Description: NF12909
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12909_low_9
NF12909_low_9
[»] chr5 (3 HSPs)
chr5 (8-160)||(25559078-25559229)
chr5 (52-206)||(26060007-26060160)
chr5 (121-157)||(23341357-23341393)
[»] chr8 (4 HSPs)
chr8 (24-262)||(16217890-16218128)
chr8 (52-307)||(15063894-15064148)
chr8 (59-205)||(22707429-22707575)
chr8 (20-151)||(24371102-24371232)
[»] chr4 (2 HSPs)
chr4 (110-299)||(12461512-12461700)
chr4 (109-253)||(22090455-22090601)
[»] chr7 (1 HSPs)
chr7 (107-307)||(16366919-16367118)
[»] scaffold0113 (1 HSPs)
scaffold0113 (110-307)||(22293-22489)
[»] chr3 (2 HSPs)
chr3 (107-262)||(14264265-14264421)
chr3 (217-262)||(16015747-16015793)
[»] chr6 (1 HSPs)
chr6 (13-99)||(22784537-22784623)


Alignment Details
Target: chr5 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 8 - 160
Target Start/End: Original strand, 25559078 - 25559229
Alignment:
Q  8 agagaagaacccaagtgaagaggagagctaggaatcacaagagaagtgacgattttggtgtattagctaagctttagaggaaaccaggtaagagggctaa 107  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| |||||||| ||||||| ||| | |    
T  25559078 agagaagaacccaagtgaagaggagagctaggaatcacaagaggagtgaagattttggtggattagctaagctttcgaggaaacaaggtaagggggat-a 25559176  T
Q  108 ggtttgttctacctaataagctataatcttgtttttcacttatgtgtcataat 160  Q
    |||||||| || |||||||||||||||||||||||||||||||| ||||||||    
T  25559177 ggtttgttttatctaataagctataatcttgtttttcacttatgggtcataat 25559229  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 52 - 206
Target Start/End: Complemental strand, 26060160 - 26060007
Alignment:
Q  52 agtgacgattttggtgtattagctaagctttagaggaaaccaggtaagagggcta-aggtttgttctacctaataagctataatcttgtttttcacttat 150  Q
    ||||| |||||||||| ||||||||||||||| ||||| | |||||||||  ||| |  |||||||| | |||||| |||||||| |||||||  |||||    
T  26060160 agtgaagattttggtgaattagctaagctttaaaggaatcaaggtaagag--ctatatatttgttcttcttaataatctataatcatgtttttagcttat 26060063  T
Q  151 gtgtcataatgattttggtatatttgtgaaaattgatggttatatgtgtaattttc 206  Q
    | | |||| |  ||||| |  ||||||||||||||||  |||||||||||||||||    
T  26060062 gggccatatttgttttgattaatttgtgaaaattgataattatatgtgtaattttc 26060007  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 23341357 - 23341393
Alignment:
Q  121 taataagctataatcttgtttttcacttatgtgtcat 157  Q
    |||||||||||||||| |||||||||||||| |||||    
T  23341357 taataagctataatctagtttttcacttatgggtcat 23341393  T

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Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 24 - 262
Target Start/End: Complemental strand, 16218128 - 16217890
Alignment:
Q  24 gaagaggagagctaggaatcacaagagaagtgacgattttggtgtattagctaagctttagaggaaaccaggtaagagggctaaggtttgttctacctaa 123  Q
    |||| |||||||||||||||||||||| |||||  |||||| || | | |||||| |||||||||||| ||||||| ||| || |||||||||||| |||    
T  16218128 gaaggggagagctaggaatcacaagaggagtgaaaattttgttggagtggctaagatttagaggaaacaaggtaagggggata-ggtttgttctacttaa 16218030  T
Q  124 taagctataatcttgtttttcacttatgtgtcataatgattttggtatatttgtgaaaattgatggttat--atgtgtaattttcgtactcatatttaag 221  Q
    |||||||||||||||||||||  ||||| |||||| |  |||||    | || || ||||||||| || |  |||| |||||||||| || ||| |||||    
T  16218029 taagctataatcttgtttttcttttatgggtcatatttgttttgaatgaattatg-aaattgatgattttggatgt-taattttcgtgcttataattaag 16217932  T
Q  222 tggtgattttgggt-tgtgaaatttgttgaaatcttgttgtt 262  Q
    |||||||||||||| ||||||||||||||||| |||||||||    
T  16217931 tggtgattttgggtatgtgaaatttgttgaaaacttgttgtt 16217890  T

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Target: chr8; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 52 - 307
Target Start/End: Complemental strand, 15064148 - 15063894
Alignment:
Q  52 agtgacgattttggtgtattagct-aagctttagaggaaaccaggtaagagggctaaggtttgttctacctaataagctataatcttgtttttcacttat 150  Q
    ||||| |||||||||| ||||||| |||||| |||| ||||||| |||| ||| |||| ||||||||||||||||| |||||||| | ||||| ||||||    
T  15064148 agtgaagattttggtgaattagcttaagcttaagag-aaaccagctaagggggataag-tttgttctacctaataatctataatcatatttttgacttat 15064051  T
Q  151 gtgtcataatgattttggtatatttgtg-aaaattgatggttatatgtgtaattttcgtactcatatttaagtggtgattttgggt-tgtgaaatttgtt 248  Q
    | |||||| |  ||||| |  | ||||| |||||||||| |||||||||||||||| || ||   | ||||||||||| ||||||| ||||||| |||||    
T  15064050 gggtcatatttgttttgattgaattgtgaaaaattgatgattatatgtgtaatttttgtgcttggaattaagtggtgagtttgggtatgtgaaagttgtt 15063951  T
Q  249 gaaatcttgttgttattgcatataaatttcattgttgttgtatgataagttttttactt 307  Q
    |||| |||||||||  |||  |||||||||||||||| | |||| |||||| |||||||    
T  15063950 gaaaacttgttgttgatgc--ataaatttcattgttgatatatgttaagttgtttactt 15063894  T

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Target: chr8; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 59 - 205
Target Start/End: Original strand, 22707429 - 22707575
Alignment:
Q  59 attttggtgtattagct-aagctttagaggaaaccaggtaagagggctaaggtttgttctacctaataagctataatcttgtttttcacttatgtgtcat 157  Q
    ||||||||| ||||||| |||||| ||||||| | ||||||   || || |||||||||| |||||||| |||||||| |||||||  |||||| | |||    
T  22707429 attttggtgaattagcttaagcttaagaggaatcaaggtaatgaggata-ggtttgttcttcctaataatctataatcatgtttttagcttatgggacat 22707527  T
Q  158 aatgattttggtatatttgtgaaaattgatggttatatgtgtaatttt 205  Q
    | |  ||||| | ||||||||||||||||||  |||||||||||||||    
T  22707528 atttgttttgatttatttgtgaaaattgatgagtatatgtgtaatttt 22707575  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 151
Target Start/End: Complemental strand, 24371232 - 24371102
Alignment:
Q  20 aagtgaagaggagagctaggaatcacaagagaagtgacgattttggtgtattagctaagctttagaggaaaccaggtaagagggctaaggtttgttctac 119  Q
    ||||||||||||||||| ||||||||||||| | ||| |||| | |   ||||||| |||||| |||||||| | ||||| ||| | ||||   ||||||    
T  24371232 aagtgaagaggagagcttggaatcacaagaggaatgaagattcttgaagattagcttagctttggaggaaacaatgtaagggggat-aggtagattctac 24371134  T
Q  120 ctaataagctataatcttgtttttcacttatg 151  Q
     ||||||||||||||||  |||||||||||||    
T  24371133 ttaataagctataatctactttttcacttatg 24371102  T

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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 110 - 299
Target Start/End: Complemental strand, 12461700 - 12461512
Alignment:
Q  110 tttgttctacctaataagctataatcttgtttttcacttatgtgtcataatgattttggtatatttgtgaaaattgatggttatatgtgtaattttcgta 209  Q
    |||||||  |||||||| |||||||| |||||||  |||||| |||||| |  |||||    ||||||||||||||||| |||||||||||||||||||     
T  12461700 tttgttcctcctaataatctataatcatgtttttagcttatgggtcatatttgttttgaatgatttgtgaaaattgatgattatatgtgtaattttcgtg 12461601  T
Q  210 ctcatatttaagtggtgattttgggt-tgtgaaatttgttgaaatcttgttgttattgcatataaatttcattgttgttgtatgataagtt 299  Q
    ||   | ||||||||||| ||||||| | ||||| ||||||||| || ||||||  |||  |||||||||||||||| | |||| ||||||    
T  12461600 cttgaaattaagtggtgaatttgggtatatgaaagttgttgaaaactcgttgttgatgc--ataaatttcattgttgatatatgttaagtt 12461512  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 109 - 253
Target Start/End: Complemental strand, 22090601 - 22090455
Alignment:
Q  109 gtttgttctacctaataagctataatcttgtttttcacttatgtgtcataatg-attttggtatatttgtgaaaattgatggttatatgtgtaattttcg 207  Q
    ||||||||| |||||||| |||||||| |||||||  |||||| ||||||||  |||||| |  | ||||||||||||||| ||||||||||||||||||    
T  22090601 gtttgttcttcctaataatctataatcatgtttttagcttatgggtcataatttattttgtttgaattgtgaaaattgatgattatatgtgtaattttcg 22090502  T
Q  208 tactcatatttaagtggtgattttgggt-tgtgaaatttgttgaaat 253  Q
    | ||   | |||||| |||| ||||||| ||||||| ||||||||||    
T  22090501 tgcttggaattaagtagtgaatttgggtatgtgaaagttgttgaaat 22090455  T

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Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 107 - 307
Target Start/End: Complemental strand, 16367118 - 16366919
Alignment:
Q  107 aggtttgttctacctaataagctataatcttgtttttcacttatgtgtcataatgattttggtatatttgtgaaaattgatggttatatgtgtaattttc 206  Q
    ||||||||||| ||||||||  ||||||| ||||||| ||||||| |||||| |  ||||| |  | ||||||||||||||| |||||||||||| ||||    
T  16367118 aggtttgttcttcctaataatatataatcatgtttttaacttatgggtcatactttttttgattgaattgtgaaaattgatgattatatgtgtaactttc 16367019  T
Q  207 gtactcatatttaagtggtgattttgggt-tgtgaaatttgttgaaatcttgttgttattgcatataaatttcattgttgttgtatgataagttttttac 305  Q
    || ||   | || |||||||| ||||||| |  |||| ||||||||| ||| |||||  |||  |||||||||||||||| | |||| |||||| |||||    
T  16367018 gttcttggaattgagtggtgaatttgggtatacgaaagttgttgaaaacttattgttgatgc--ataaatttcattgttgatatatgttaagttgtttac 16366921  T

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Target: scaffold0113 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 110 - 307
Target Start/End: Original strand, 22293 - 22489
Alignment:
Q  110 tttgttctacctaataagctataatcttgtttttcacttatgtgtcataatgattttggtatatttgtgaaaattgatggttatatgtgtaattttcgta 209  Q
    |||||||| |||||||| |||||||| |||||||  |||||| |||||| |  ||||| |  ||||||||| ||| ||| ||||||||| || ||||||     
T  22293 tttgttcttcctaataatctataatcatgtttttagcttatgagtcatatttgttttgtttgatttgtgaagattaatgattatatgtgcaactttcgtg 22392  T
Q  210 ctcatatttaagtggtgattttgggt-tgtgaaatttgttgaaatcttgttgttattgcatataaatttcattgttgttgtatgataagttttttactt 307  Q
     |   | ||||||||||| |||| || ||||||| ||||||||| |||||||||  ||||||  ||||||||| ||| | |||| |||||| |||||||    
T  22393 atttgaattaagtggtgagtttgagtatgtgaaagttgttgaaaacttgttgttgatgcata--aatttcattattgatatatgttaagttgtttactt 22489  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 107 - 262
Target Start/End: Complemental strand, 14264421 - 14264265
Alignment:
Q  107 aggtttgttctacctaataagctataatcttgtttttcacttatgtgtcataatgattttggtatatttgtgaaaattgatggttatatgtgtaattttc 206  Q
    |||||||||||||||||||| |||||||| | |||||  | |||| |||||| |  ||||| |  ||| ||||||||| ||| |||||||| ||||||||    
T  14264421 aggtttgttctacctaataatctataatcatatttttagcatatgggtcatatttgttttgattgattggtgaaaatttatgattatatgtctaattttc 14264322  T
Q  207 gtactcatatttaagtggtgattttgggt-tgtgaaatttgttgaaatcttgttgtt 262  Q
    || ||   | ||||||||||| |||| || ||||||| ||||||||| ||| |||||    
T  14264321 gtgcttgaaattaagtggtgaatttgagtatgtgaaaattgttgaaaactttttgtt 14264265  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 262
Target Start/End: Original strand, 16015747 - 16015793
Alignment:
Q  217 ttaagtggtgattttgggt-tgtgaaatttgttgaaatcttgttgtt 262  Q
    ||||||||||||||||||| ||||||| ||||||||| |||||||||    
T  16015747 ttaagtggtgattttgggtatgtgaaaattgttgaaaacttgttgtt 16015793  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 13 - 99
Target Start/End: Original strand, 22784537 - 22784623
Alignment:
Q  13 agaacccaagtgaagaggagagctaggaatcacaagagaagtgacgattttggtgtattagctaagctttagaggaaaccaggtaag 99  Q
    |||||||||||||||| ||||||||||| |||| |||| | | | |||||||||| ||||||||| | ||| ||||||| |||||||    
T  22784537 agaacccaagtgaagatgagagctaggattcactagaggattaaggattttggtggattagctaatcattataggaaacaaggtaag 22784623  T

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