View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1290R-Insertion-2 (Length: 752)
Name: NF1290R-Insertion-2
Description: NF1290R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1290R-Insertion-2 |
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Alignment Details
Target: chr3 (Bit Score: 277; Significance: 1e-154; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 8 - 375
Target Start/End: Complemental strand, 37276122 - 37275764
Alignment:
| Q |
8 |
acaaacatgggtaaaaagtagatattaggtaagtaattactgtaattacatcaatcaaagtaggcagtgtttgtgatagagatgtaatttatttagctaa |
107 |
Q |
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| T |
37276122 |
acaaacatgggtaaaaagtagatattaggtaagtaattactgtaattacatcaatcaaagtaggcagtgtttgtgatagagatgtaatttattta----- |
37276028 |
T |
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| Q |
108 |
tttatttattatgtaaatgaagtaatgagcaagtgattgctgtaggagtacgaaaccaaggtaccnnnnnnnntaa-tccatagatgacttgccaacacc |
206 |
Q |
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| T |
37276027 |
----tttattatgtaaatgaagtaatgagcaagtgattgctgtaggagtacgaaaccaaggtaccaaaaaaaaaaaatccatagatgacttgccaatacc |
37275932 |
T |
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| Q |
207 |
aaaatctaaaaagccccatcttaaagagaaagagaaccaaaaagggtcacaaaactttgctaccatttgtccacctcaacaagcatgtgatgcacttttc |
306 |
Q |
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| T |
37275931 |
aaagtctaaaaaggcc-atcttaaagagaaagagaaccaaaaagggtcacaaaacattgctaccatttgtccacctcaacaagcatgtgatgcacttttc |
37275833 |
T |
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| Q |
307 |
aaccaaattcaaccttacaatgactatttaagtatttattcatttaatcttttcaaatatttcatattt |
375 |
Q |
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| T |
37275832 |
aaccaaattcaaccttacaatgactatttaagtatttattcatttaatcttttcaaatatttcatattt |
37275764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 184; E-Value: 3e-99
Query Start/End: Original strand, 398 - 589
Target Start/End: Complemental strand, 37275721 - 37275530
Alignment:
| Q |
398 |
caagaataaccatgtgcaatcacagtggcaacaagacagattgaaaaagcgcatgacccaataaataaataatattaaaaatagcagctgttaagttaag |
497 |
Q |
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| T |
37275721 |
caagaataaccatgtgcaatcacagtggcaacaagacagattgaaaaagtgcacgacccaataaataaataatattaaaaatagcagctgttaagttaag |
37275622 |
T |
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| Q |
498 |
ttaatgtatttgtgagggagggaccaacaaaaggaaagtcctaaccttttcctttcactaggaaaaggacatgaccccacttccattatatc |
589 |
Q |
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| T |
37275621 |
ttaatgtatttgtgagggagggaccaacaaaaggaaagtcctaaccttttcctttcactaggaaaaggacatgaccccacttccattatatc |
37275530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 652 - 752
Target Start/End: Complemental strand, 37275467 - 37275367
Alignment:
| Q |
652 |
accatacacacacatcaaacaccatttccattattattccttcaaaataatatctaacctacaaataatatctatctacacctttgcttatctatcacag |
751 |
Q |
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| T |
37275467 |
accatacacacacatcaaacaccatttccattattattccttcaaaataatatctaacctacaaataatatctatctacacctttgcttatctatctcag |
37275368 |
T |
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| Q |
752 |
g |
752 |
Q |
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| T |
37275367 |
g |
37275367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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