View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1290R-Insertion-3 (Length: 600)
Name: NF1290R-Insertion-3
Description: NF1290R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1290R-Insertion-3 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 9 - 600
Target Start/End: Original strand, 5607390 - 5607980
Alignment:
| Q |
9 |
gttcattcatggttgctcagtttgcatagttctctttttcaaggcattcaactgcctaagtttgtcaagtatggatctttactacctatgaattttttat |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5607390 |
gttcattcatggttgctcagtttgcatagttctctttttcaaggcattcaactgcctaagtttgtcaagtatggatctttactacctatgaattttttat |
5607489 |
T |
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| Q |
109 |
tgttttcatttaattggattaataagataagatgattaaattgttgatcacaatttcannnnnnnnnnnnn----gtagcattttaactggctggggaaa |
204 |
Q |
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| T |
5607490 |
tgttttcatttaattggattaataagat-----gattaaattgttgatcacaatttcatttttttatttttttttgtagcattttaactggctggggaaa |
5607584 |
T |
|
| Q |
205 |
gcacagtaaagtgcttggagatggaactttaaaaaaggctgttgaagcactcctaaatggcatgggctccccctttagaatttatgagaataatttggga |
304 |
Q |
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| T |
5607585 |
gcacagtaaagtgcttggagatggaactttaaaaaaggctgttgaagcactcctaaatggcatgggctcccccttcagaatttatgagaataatttggga |
5607684 |
T |
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| Q |
305 |
agattggtgtctcctggagaagtgctgactgcttggctgacaaaacctggagttttcaacttgcttgttctgtatgatgtcctaaatcattctcaaccag |
404 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5607685 |
agattggtgtctcctggagaagtgctgactgcttggttgacaaaacctggagttttcaacttgcttgttctgtctgatgtcctaaatcattctcaaccag |
5607784 |
T |
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| Q |
405 |
ctgctccatcacatgattatcctactcttcaaaattagattgatacaagctgcgtagcactgacacttcagattgaatgtgtctgatgtctaaaatgtgt |
504 |
Q |
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| T |
5607785 |
ctgctccatcacatgattatcctactcttcaaaattagattgatacaagctgcgtagcactgacacttcagattgaatgtgtctggtgtctaaaatgtgt |
5607884 |
T |
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| Q |
505 |
tggtgtccgacactgggcaccgtcacatgtgattaccttcattcnnnnnnnnnnnnaattcattactagtctcagagcgtagggttggtgtctgtg |
600 |
Q |
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| T |
5607885 |
cggtgtccgacaccgggcaccgtcgcatgtgattactttcattctttttattttttaattcattactagtgttggagcgtagggttggtgtctgtg |
5607980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 182 - 419
Target Start/End: Complemental strand, 5588410 - 5588173
Alignment:
| Q |
182 |
agcattttaactggctggggaaagcacagtaaagtgcttggagatggaactttaaaaaaggctgttgaagcactcctaaatggcatgggctcccccttta |
281 |
Q |
| |
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||||| |||||||| |||||||||||||| |||||| | || || |||||||| |||| |||||| || |||||||| ||||| ||||| || ||||||| |
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| T |
5588410 |
agcatcttaactggttggggaaagcacagcaaagtgatgggtgacggaactttgaaaagggctgtcgaggcactccttaatggaatggggtcacccttta |
5588311 |
T |
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| Q |
282 |
gaatttatgagaataatttgggaagattggtgtctcctggagaagtgctgactgcttggctgacaaaacctggagttttcaacttgcttgttctgtatga |
381 |
Q |
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| T |
5588310 |
ggattgctgagggtaatttgggaaggtattattctcctggaaatttgttggctacttggctgagacaacccagcattttcaatctgcttgttctgtatga |
5588211 |
T |
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| Q |
382 |
tgtcctaaatcattctcaaccagctgctccatcacatg |
419 |
Q |
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| T |
5588210 |
tgtcctaaatcattctcaagctgctgctccatcacatg |
5588173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 182 - 419
Target Start/End: Complemental strand, 5593371 - 5593134
Alignment:
| Q |
182 |
agcattttaactggctggggaaagcacagtaaagtgcttggagatggaactttaaaaaaggctgttgaagcactcctaaatggcatgggctcccccttta |
281 |
Q |
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||||| |||||||| |||||||||||||| |||||| | || || |||||||| |||| |||||| || |||||||| ||||| ||||| || ||||||| |
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| T |
5593371 |
agcatcttaactggttggggaaagcacagcaaagtgatgggtgacggaactttgaaaagggctgtcgaggcactccttaatggaatggggtcacccttta |
5593272 |
T |
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| Q |
282 |
gaatttatgagaataatttgggaagattggtgtctcctggagaagtgctgactgcttggctgacaaaacctggagttttcaacttgcttgttctgtatga |
381 |
Q |
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| ||| |||| |||||||||||| | ||||||||| | || || || ||||||||| | |||| | ||||||| |||||||||||||||| |
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| T |
5593271 |
ggattgctgagggtaatttgggaaggtattattctcctggaaatttgttggctacttggctgagacaacccagcattttcaatctgcttgttctgtatga |
5593172 |
T |
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| Q |
382 |
tgtcctaaatcattctcaaccagctgctccatcacatg |
419 |
Q |
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| T |
5593171 |
tgtcctaaatcattctcaagctgctgctccatcacatg |
5593134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 5588574 - 5588495
Alignment:
| Q |
9 |
gttcattcatggttgctcagtttgcatagttctctttttcaaggcattcaactgcctaagtttgtcaagtatggatcttt |
88 |
Q |
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||||||||||||||||||| | |||||||| || | ||| ||||| | ||||||||||| |||| | |||||||||||| |
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| T |
5588574 |
gttcattcatggttgctcaatatgcatagtactttatttgaaggctctgaactgcctaagattgtgacgtatggatcttt |
5588495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 5593535 - 5593456
Alignment:
| Q |
9 |
gttcattcatggttgctcagtttgcatagttctctttttcaaggcattcaactgcctaagtttgtcaagtatggatcttt |
88 |
Q |
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| T |
5593535 |
gttcattcatggttgctcaatatgcatagtactttatttgaaggctctgaactgcctaagattgtgacgtatggatcttt |
5593456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 458 - 486
Target Start/End: Original strand, 3580560 - 3580588
Alignment:
| Q |
458 |
gtagcactgacacttcagattgaatgtgt |
486 |
Q |
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| T |
3580560 |
gtagcactgacacttcagattgaatgtgt |
3580588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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