View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1290R-Insertion-8 (Length: 318)
Name: NF1290R-Insertion-8
Description: NF1290R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1290R-Insertion-8 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 171 - 318
Target Start/End: Complemental strand, 21307174 - 21307028
Alignment:
| Q |
171 |
ggaaattcaaagttgtttgatctacatgtttcactttaaattagcacatgtttttgctcatcgttgttatatcattttgcaaaaagtttttgctcatcgt |
270 |
Q |
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| T |
21307174 |
ggaaattcaaagttgtttgatctacatgtttcactttaaattagcacatgtttttgctcatcgttgttatatcatttt-caaaaagtttttgctcatcgt |
21307076 |
T |
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| Q |
271 |
tgttatatcattttcaaaataggtaaacgcctatcattttcctattca |
318 |
Q |
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| T |
21307075 |
tgttatatcattttcaaaataggtaaacgtctatcattttcctattca |
21307028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 171 - 318
Target Start/End: Complemental strand, 21315012 - 21314866
Alignment:
| Q |
171 |
ggaaattcaaagttgtttgatctacatgtttcactttaaattagcacatgtttttgctcatcgttgttatatcattttgcaaaaagtttttgctcatcgt |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
21315012 |
ggaaattcaaagttgtttgatctacatgtttcactttaaattagcacatgtttttgctcatcgttgttatatcatttt-caaaaagtttttgctcatcgt |
21314914 |
T |
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| Q |
271 |
tgttatatcattttcaaaataggtaaacgcctatcattttcctattca |
318 |
Q |
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| T |
21314913 |
tgttatatcattttcaaaataggtaaacgtctatcattttcctattca |
21314866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 21307274 - 21307157
Alignment:
| Q |
9 |
atagagttgtttcagctaattccagtgaagagggaggaaatattcttgaggggagaacagggggcttcaatttgctggaataatttagccataagaaatg |
108 |
Q |
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| T |
21307274 |
atagagttgtttcagctaattccagtgaagagggaggaaatattcttgaggggagaacagggggcttcaatttgctggaataatttagccataagaaatg |
21307175 |
T |
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| Q |
109 |
ggaaattcaaagttgttt |
126 |
Q |
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| T |
21307174 |
ggaaattcaaagttgttt |
21307157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 9 - 126
Target Start/End: Complemental strand, 21315112 - 21314995
Alignment:
| Q |
9 |
atagagttgtttcagctaattccagtgaagagggaggaaatattcttgaggggagaacagggggcttcaatttgctggaataatttagccataagaaatg |
108 |
Q |
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| T |
21315112 |
atagagttgtttcagctaattccagtgaagagggaggaaatattcttgaggggagaacagggggcttcaatttgctggaataatttagccataagaaatg |
21315013 |
T |
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| Q |
109 |
ggaaattcaaagttgttt |
126 |
Q |
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| T |
21315012 |
ggaaattcaaagttgttt |
21314995 |
T |
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