View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1290_high_13 (Length: 275)
Name: NF1290_high_13
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1290_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 36 - 267
Target Start/End: Original strand, 27644250 - 27644481
Alignment:
| Q |
36 |
acagggtatggtaccacttgcactatgaaaatacaaaggttgtgtaacccatgattttatcacctgaaagaaatcttatgctcagagaagaaaatctcta |
135 |
Q |
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| T |
27644250 |
acagggtatggtaccactcgcactatgaaaatacaaaggttgtgtaacccatgattttatcacctgaaagaaatcttatgctcagagaagaaaatctcta |
27644349 |
T |
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| Q |
136 |
ggtacccaataaaaaaggcactctaaccatattaaattgataagattaattaagcatacctcatgtcatacccttttgtttggagtgaagggaacactca |
235 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
27644350 |
ggtatccaataaaaaaggcactctaaccatattaaattgataagattaattaagcatacctcatgtcatacacttttgtttggagtgaagggaacactca |
27644449 |
T |
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| Q |
236 |
acgagcccaatcaagttcttccctttcatctc |
267 |
Q |
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| T |
27644450 |
acgagcccaatcaagttcttccctttcatctc |
27644481 |
T |
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