View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1290_high_19 (Length: 250)
Name: NF1290_high_19
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1290_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 37275622 - 37275530
Alignment:
| Q |
1 |
gttaatgtatttgtgagggagggaccaacaaaaggaaagtcctaaccttttcctttcactaggaaaaggacatgaccccacttccattatatc |
93 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37275622 |
gttaatgtatttgtgagggagggaccaacaaaaggaaagtcctaaccttttcctttcactaggaaaaggacatgaccccacttccattatatc |
37275530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 156 - 244
Target Start/End: Complemental strand, 37275467 - 37275379
Alignment:
| Q |
156 |
accatacacacacatcaaacaccatttccattattattccttcaaaataatatctaacctacaaataatatctatctacacctttgctt |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37275467 |
accatacacacacatcaaacaccatttccattattattccttcaaaataatatctaacctacaaataatatctatctacacctttgctt |
37275379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University