View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1290_high_8 (Length: 340)
Name: NF1290_high_8
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1290_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 29 - 334
Target Start/End: Original strand, 37599017 - 37599310
Alignment:
| Q |
29 |
aaatagctcataaaccttttattttgtctaaaaagcacttaaataaatggataagaacactattggaaaaactaataatctttcattttactataccctc |
128 |
Q |
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| T |
37599017 |
aaatagctcataaaccttttattttgtccaaaaagcacttaaataaatggataagaacactattggaaaaactaataatctttcattttactataccctc |
37599116 |
T |
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| Q |
129 |
gtaaaatgagtgcttagcacacataatacaacttggtgcaagtcacaacatgcactatatgccctaaaccctaaagaagaaaaaccttattgatattgga |
228 |
Q |
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| T |
37599117 |
gtaaaatgagtgcttagcacacataatacaacttggtgcaagtcacaacatgcactatatgcactta-----aaagaagagaaaccttatcgct------ |
37599205 |
T |
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| Q |
229 |
cattggtaatgaaaaatacaaaatttaagacttcaacatcattggtgttagacaaatacaaattcaaaagcatctgaacttttttattgaaaaggagtat |
328 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37599206 |
-attgataatggaaaatacaaaatttaagacttcaacatcattagtgttagacaaatacaaattcaaaagcatctgaacttttttattgaaaaggagtat |
37599304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 29 - 313
Target Start/End: Original strand, 37605214 - 37605484
Alignment:
| Q |
29 |
aaatagctcataaaccttttattttgtctaaaaagcacttaaataaatggataagaacactattggaaaaactaataatctttcattttactataccctc |
128 |
Q |
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||||||||||||||||||||| || |||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37605214 |
aaatagctcataaaccttttaattggtctaaaa--cacttaaataaattgataagaacactattggaaaaaccaataatctttcattttactataccctc |
37605311 |
T |
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| Q |
129 |
gtaaaatgagtgcttagcacacataatacaacttggtgcaagtcacaacatgcactatatgccctaaaccctaaagaagaaaaaccttattgatattgga |
228 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||| ||||||||| | | |
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| T |
37605312 |
gtaaaatgagtgcttagcacacataatacaacttggtgcaagtcacaacatgcactatatgcactta-----aaagaagagaaaccttatcgct------ |
37605400 |
T |
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| Q |
229 |
cattggtaatgaaaaatacaaaatttaagacttcaacatcattggtgttagacaaatacaaattcaaaagcatctgaactttttt |
313 |
Q |
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|||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
37605401 |
-attgataatggaaaatacaaaatttaagacttcaacatcattagtgttagacaaatacaaattcaaaagcatctgaactttttt |
37605484 |
T |
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