View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1290_low_10 (Length: 478)
Name: NF1290_low_10
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1290_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 7 - 462
Target Start/End: Original strand, 32436506 - 32436956
Alignment:
| Q |
7 |
tccaacaatatccaataaatctctaattatatctacgcacgatgagtataaaactactagttggatgaggactttaattaattctgaaaagtacgagttt |
106 |
Q |
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| T |
32436506 |
tccaacaatatccaataaatctctaattatatctacgcacgatgagtataaaactactagttggatgaggactttaattca------aaagtacgagttt |
32436599 |
T |
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| Q |
107 |
caaactaagacataaatcacaatttttaactttagaaatttcattcttgttnnnnnnnngggtcatgtttcttatgagaatcaaatgatacgtt-attaa |
205 |
Q |
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| T |
32436600 |
caaactaagacataaatcacaatttttaactttagaaatttcattcttgtt-aaaaaaagggtcatgtttcttatgagaatcaaatgatacgttaataaa |
32436698 |
T |
|
| Q |
206 |
tgatcttatctcaac-aaaaagttgaaataaatatacgttgagaaataattttcttnnnnnnnnnnnnnngttgaaataaattttgtgaagaagtacaat |
304 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||||||| |||| | |||||||||||||||||||||||||||||| |
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| T |
32436699 |
tgatcttatctcaacaaaaaagttgaaataaatatacgttaagaaataa-tttcctctcaaaaaaaaaaagttgaaataaattttgtgaagaagtacaat |
32436797 |
T |
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| Q |
305 |
tcttaaagaagaaaaacataaacaacaaagaccacttacaaaattgaaggtcaaaataacgaaataaaaatataagaaaccc-nnnnnnnagtggtacgt |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||| || |||||| |
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| T |
32436798 |
tcttaaagaagaaaaacataaacaacaaagaccacttaaaaaattgaaggtcaaaatcacgcaataaaaatataagaaacccttttttttggtagtacgt |
32436897 |
T |
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| Q |
404 |
agaagtaagggaaattacactatgagattaaagactaactatgtgtttgaatgcacatt |
462 |
Q |
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| T |
32436898 |
acaagtaagggaaattacactatgagattaaagactaagtatgtgtttgaatgcacatt |
32436956 |
T |
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