View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1290_low_12 (Length: 454)
Name: NF1290_low_12
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1290_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 24 - 303
Target Start/End: Complemental strand, 25996718 - 25996439
Alignment:
| Q |
24 |
agccgtgacattaggagggctaggactgttgttctgcaaagaatcattaaacatcctaacatttgaagaattatggtatttggtcttgtttgttaaggtt |
123 |
Q |
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| T |
25996718 |
agccgtgacattaggagagctaggactgttgttctgcaaagaatcattaagcatcctaacatttgaagaattatggtatttggtcttgtttgttaaggtt |
25996619 |
T |
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| Q |
124 |
ggagaacacatatttttcttatgtgtgtgttgtgatatatttgtttatttatggatccatgcattaatgggttcttgttgtttaagataataacaggaca |
223 |
Q |
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| T |
25996618 |
ggagaacacatatttttcttatgtgtgtgttgtgatatatttgtttatttatggatccatgcattaatgggttcttgttgtttaagataataataggaca |
25996519 |
T |
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| Q |
224 |
tatatattcggtatgtcttgtgacacttgcagctatataaatttatttattcttttgaagcaatattagtgtgctaatgc |
303 |
Q |
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| T |
25996518 |
tatatattcggtatgtcttgtgacacttgcagctatataaatttatttattcttttgaagcaatattagtgtgctaatgc |
25996439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 348 - 439
Target Start/End: Complemental strand, 25996394 - 25996304
Alignment:
| Q |
348 |
ggatatgagtaactaatttggaggttagttctttcgttgggtcgagtatcccttatactttttccgaattgtggataaagtaccgtttgtat |
439 |
Q |
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| T |
25996394 |
ggatatgagtaactaatttggaggttagttctttcattggatcgcgtatctcttatactttttccgaattgt-gataaagtaccgtttgtat |
25996304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 161 - 216
Target Start/End: Complemental strand, 24361161 - 24361108
Alignment:
| Q |
161 |
tatttgtttatttatggatccatgcattaatgggttcttgttgtttaagataataa |
216 |
Q |
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| T |
24361161 |
tatttgtttatttatggatccatgcttaaattggttcttgt--tttaagataataa |
24361108 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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