View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1290_low_14 (Length: 395)
Name: NF1290_low_14
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1290_low_14 |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold0152 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 99 - 395
Target Start/End: Original strand, 31274544 - 31274848
Alignment:
| Q |
99 |
aacttgtggggggctaacacatgatgaaggaaaacaagagaataaggagtagttacagcagtaacg--------acgttacctagctttagtttgtttac |
190 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||| | |||||||| ||||||||||||||| |
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| T |
31274544 |
aacttgtggggggctaacacatcatgaaggaaaacaagagaatgaggagtagttacaacagtaacttgcgtagcaagttacctaactttagtttgtttac |
31274643 |
T |
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| Q |
191 |
agttagttagaagagttccaatactctatgcttcagctcattgtaatatagtacacctcttagcttctttataagttgtactccttcattatttcatcaa |
290 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||||||||||| |
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| T |
31274644 |
agttagttagaagagttccaatactctatgcttcagctcattgtaatatagtatacctcttagcttctatataaattgtactccttcattatttcatcaa |
31274743 |
T |
|
| Q |
291 |
ttaatgagaatgttattcatctatttcttctctcataatagagccaaaacaaagaatggtgtcataatgatccaaaataaaacaatagtgattcaagtag |
390 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||| |
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| T |
31274744 |
ttaatgagaatgttattcatctatttcttctctcataatagagccaaaacaaagaatggagtcataatgatctaaaataaaacgttagtgattcaagtag |
31274843 |
T |
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| Q |
391 |
ttttc |
395 |
Q |
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||||| |
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| T |
31274844 |
ttttc |
31274848 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 175 - 332
Target Start/End: Original strand, 39236065 - 39236221
Alignment:
| Q |
175 |
gctttagtttgtttacagttagttagaagagttccaatactctatgcttcagctcattgtaatatagtacacctcttagcttctttataagttgtactcc |
274 |
Q |
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| T |
39236065 |
gctttagttagttatcaattagttagaagagttctaatactctatgctacacctcattgtaatatagtacaccacttagcttctatataagttgtactcc |
39236164 |
T |
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| Q |
275 |
ttcattatttcatcaattaatgagaatgttattcatctatttcttctctcataataga |
332 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39236165 |
ttcatta-ttcatcaattaatgagaatgttattcatctatttcttctctcataataga |
39236221 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 167 - 330
Target Start/End: Original strand, 20123616 - 20123778
Alignment:
| Q |
167 |
gttacctagctttagtttgtttacagttagttagaagagttccaatactctatgcttcagctcattgtaatatagtacacctcttagcttctttataagt |
266 |
Q |
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|||| |||||||||||| |||| ||||||||||||||||||| |||||||||||||| |||||| ||||||||||| |||| |||||||||| ||||||| |
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| T |
20123616 |
gttatctagctttagttagttttcagttagttagaagagttctaatactctatgcttaagctcactgtaatatagtgcaccacttagcttctatataagt |
20123715 |
T |
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| Q |
267 |
tgtactccttcattatttcatcaattaatgagaatgttattcatctatttcttctctcataata |
330 |
Q |
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| T |
20123716 |
tttactccttcatta-ttcatcaattaatgagaatattattcatctatttcttctctcataata |
20123778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 191 - 330
Target Start/End: Complemental strand, 23369791 - 23369653
Alignment:
| Q |
191 |
agttagttagaagagttccaatactctatgcttcagctcattgtaatatagtacacctcttagcttctttataagttgtactccttcattatttcatcaa |
290 |
Q |
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||||||||||| |||||| |||||||||||||| | |||||||||| |||||||||| ||||| |||| |||||||||||||||||||||| |||||||| |
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| T |
23369791 |
agttagttagatgagttctaatactctatgcttgacctcattgtaacatagtacaccacttagtttctatataagttgtactccttcatta-ttcatcaa |
23369693 |
T |
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| Q |
291 |
ttaatgagaatgttattcatctatttcttctctcataata |
330 |
Q |
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|||||||||||||| ||||||||| | ||||||||||||| |
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| T |
23369692 |
ttaatgagaatgttcttcatctatcttttctctcataata |
23369653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 99 - 154
Target Start/End: Complemental strand, 23369880 - 23369825
Alignment:
| Q |
99 |
aacttgtggggggctaacacatgatgaaggaaaacaagagaataaggagtagttac |
154 |
Q |
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||||| |||||||||||||||| |||||| ||||| ||||||||||||||||||| |
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| T |
23369880 |
aacttatggggggctaacacatcatgaagagaaacatgagaataaggagtagttac |
23369825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 172 - 330
Target Start/End: Complemental strand, 8736974 - 8736818
Alignment:
| Q |
172 |
ctagctttagtttgtttacagttagttagaagagttccaatactctatgcttcagctcattgtaatatagtacacctcttagcttctttataagttgtac |
271 |
Q |
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|||||||||||| |||| |||||||||||||||||| | ||||||||| | ||||||||||| ||||||||| ||||| ||| ||||||||||| |
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| T |
8736974 |
ctagctttagttggttt-cagttagttagaagagttttactactctatgttatgcctcattgtaatgtagtacaccacttagaatctatataagttgtaa |
8736876 |
T |
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| Q |
272 |
tccttcattatttcatcaattaatgagaatgttattcatctatttcttctctcataata |
330 |
Q |
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|| | || | ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
8736875 |
tc-tacactcattcatcaattaatgagaatattattcatctatttcttctctcataata |
8736818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 26215968 - 26216052
Alignment:
| Q |
167 |
gttacctagctttagtttgtttacagttagttagaagagttccaatactctatgcttcagctcattgt-aatatagtacacctct |
250 |
Q |
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||||||||||||||||| |||| |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| |
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| T |
26215968 |
gttacctagctttagttagtttctagttagttagaagagttctaatactctatgcttcagctcattgtaaatatagtacacctct |
26216052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0152
Description:
Target: scaffold0152; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 270
Target Start/End: Complemental strand, 1858 - 1756
Alignment:
| Q |
167 |
gttacctagctttagtttgtttacagttagttagaagagttccaatactctatgcttcagctcattgtaatatagtacacctcttagcttctttataagt |
266 |
Q |
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|||| |||||||||||| |||| | |||||||| ||||||| ||||||||||||| |||||||||||||||| |||||||||| || ||||||| |
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| T |
1858 |
gttatctagctttagttagttt-ctgttagttacaagagttttaatactctatgctatgtctcattgtaatatagtgcacctcttagaggctatataagt |
1760 |
T |
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| Q |
267 |
tgta |
270 |
Q |
| |
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|||| |
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|
| T |
1759 |
tgta |
1756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0152; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 270
Target Start/End: Complemental strand, 6105 - 6003
Alignment:
| Q |
167 |
gttacctagctttagtttgtttacagttagttagaagagttccaatactctatgcttcagctcattgtaatatagtacacctcttagcttctttataagt |
266 |
Q |
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|||| |||||||||||| |||| | |||||||| ||||||| ||||||||||||| |||||||||||||||| |||||||||| || ||||||| |
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| T |
6105 |
gttatctagctttagttagttt-ctgttagttacaagagttttaatactctatgctatgtctcattgtaatatagtgcacctcttagaggctatataagt |
6007 |
T |
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| Q |
267 |
tgta |
270 |
Q |
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|
|||| |
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|
| T |
6006 |
tgta |
6003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 167 - 270
Target Start/End: Complemental strand, 21198102 - 21198000
Alignment:
| Q |
167 |
gttacctagctttagtttgtttacagttagttagaagagttccaatactctatgcttcagctcattgtaatatagtacacctcttagcttctttataagt |
266 |
Q |
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|||| |||||||||||| |||| | |||||||| ||||||| ||||||||||||| |||||||||||||||| |||||||||| || ||||||| |
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| T |
21198102 |
gttatctagctttagttagttt-ctgttagttacaagagttttaatactctatgctatgtctcattgtaatatagtgcacctcttagaggctatataagt |
21198004 |
T |
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| Q |
267 |
tgta |
270 |
Q |
| |
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|||| |
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|
| T |
21198003 |
tgta |
21198000 |
T |
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