View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1290_low_15 (Length: 362)
Name: NF1290_low_15
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1290_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 37275798 - 37276122
Alignment:
| Q |
1 |
atacttaaatagtcattgtaaggttgaatttggttgaaaagtgcatcacatgcttgttgaggtggacaaatggtagcaaagttttgtgaccctttttggt |
100 |
Q |
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| T |
37275798 |
atacttaaatagtcattgtaaggttgaatttggttgaaaagtgcatcacatgcttgttgaggtggacaaatggtagcaatgttttgtgaccctttttggt |
37275897 |
T |
|
| Q |
101 |
tctctttctctttaagatggggctttttagattttggtgttggcaagtcatctatgga-ttannnnnnnnggtaccttggtttcgtactcctacagcaat |
199 |
Q |
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|||||||||||||||||| || ||||||||| |||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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| T |
37275898 |
tctctttctctttaagat-ggcctttttagactttggtattggcaagtcatctatggattttttttttttggtaccttggtttcgtactcctacagcaat |
37275996 |
T |
|
| Q |
200 |
cacttgctcattacttcatttacataataaataaattagctaaataaattacatctctatcacaaacactgcctactttgattgatgtaattacagtaat |
299 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37275997 |
cacttgctcattacttcatttacataataaa---------taaataaattacatctctatcacaaacactgcctactttgattgatgtaattacagtaat |
37276087 |
T |
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| Q |
300 |
tacttacctaatatctactttttacccatgtttgt |
334 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
37276088 |
tacttacctaatatctactttttacccatgtttgt |
37276122 |
T |
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