View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1290_low_21 (Length: 316)

Name: NF1290_low_21
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1290_low_21
NF1290_low_21
[»] chr4 (19 HSPs)
chr4 (16-292)||(30032669-30032944)
chr4 (16-134)||(30048916-30049035)
chr4 (16-134)||(30063257-30063376)
chr4 (158-262)||(4419678-4419783)
chr4 (160-249)||(56865-56955)
chr4 (184-257)||(20610763-20610837)
chr4 (184-257)||(24039911-24039982)
chr4 (18-124)||(30229033-30229135)
chr4 (159-257)||(54264927-54265026)
chr4 (203-262)||(55677148-55677208)
chr4 (159-257)||(33359816-33359915)
chr4 (186-260)||(35230289-35230364)
chr4 (159-257)||(49039442-49039541)
chr4 (184-257)||(12585556-12585630)
chr4 (184-230)||(42432032-42432078)
chr4 (158-257)||(49319391-49319492)
chr4 (186-262)||(49743388-49743465)
chr4 (186-230)||(36008301-36008345)
chr4 (186-230)||(56531261-56531305)
[»] chr2 (18 HSPs)
chr2 (184-260)||(4529757-4529834)
chr2 (184-257)||(14307691-14307765)
chr2 (184-260)||(36413784-36413861)
chr2 (184-262)||(37065426-37065505)
chr2 (159-257)||(39334878-39334977)
chr2 (185-262)||(18065279-18065357)
chr2 (184-257)||(23663995-23664067)
chr2 (211-260)||(44240084-44240133)
chr2 (184-257)||(10602029-10602104)
chr2 (184-257)||(1244593-1244667)
chr2 (204-257)||(12206542-12206596)
chr2 (184-257)||(25406647-25406721)
chr2 (184-262)||(26975291-26975369)
chr2 (204-257)||(32256180-32256234)
chr2 (184-257)||(37123210-37123284)
chr2 (186-259)||(407505-407578)
chr2 (189-229)||(10767016-10767056)
chr2 (186-230)||(11133102-11133146)
[»] chr3 (20 HSPs)
chr3 (159-262)||(28951865-28951969)
chr3 (158-257)||(24160525-24160625)
chr3 (184-262)||(6054217-6054296)
chr3 (159-262)||(3461715-3461820)
chr3 (185-257)||(32080080-32080153)
chr3 (186-262)||(36842188-36842265)
chr3 (186-249)||(42665930-42665994)
chr3 (184-263)||(55318041-55318121)
chr3 (162-257)||(794006-794101)
chr3 (184-262)||(4045626-4045705)
chr3 (188-257)||(22432908-22432978)
chr3 (184-257)||(23237386-23237460)
chr3 (159-256)||(24130558-24130656)
chr3 (184-257)||(51017814-51017887)
chr3 (184-260)||(31902200-31902276)
chr3 (184-257)||(44592024-44592097)
chr3 (198-257)||(21248987-21249047)
chr3 (184-239)||(26583125-26583181)
chr3 (186-230)||(32508819-32508863)
chr3 (186-230)||(42271038-42271082)
[»] chr5 (10 HSPs)
chr5 (159-257)||(28537134-28537233)
chr5 (185-257)||(27006365-27006438)
chr5 (184-260)||(41405082-41405159)
chr5 (184-259)||(32252914-32252990)
chr5 (159-262)||(42553133-42553236)
chr5 (184-257)||(31556842-31556916)
chr5 (184-257)||(38040290-38040363)
chr5 (183-257)||(42260717-42260792)
chr5 (211-257)||(31280377-31280423)
chr5 (186-230)||(18872547-18872591)
[»] chr1 (21 HSPs)
chr1 (159-257)||(9768806-9768905)
chr1 (166-257)||(2903024-2903116)
chr1 (190-261)||(24889170-24889242)
chr1 (184-257)||(12553217-12553292)
chr1 (159-257)||(18003815-18003914)
chr1 (163-262)||(18646691-18646789)
chr1 (159-257)||(41677059-41677158)
chr1 (184-257)||(50199473-50199547)
chr1 (186-262)||(23750176-23750253)
chr1 (159-255)||(52961081-52961178)
chr1 (158-257)||(11238025-11238125)
chr1 (198-257)||(33844655-33844715)
chr1 (198-257)||(33949263-33949323)
chr1 (184-223)||(42908795-42908834)
chr1 (184-257)||(1721164-1721238)
chr1 (184-257)||(3341733-3341807)
chr1 (184-257)||(40454169-40454242)
chr1 (184-262)||(7015678-7015758)
chr1 (189-257)||(41182803-41182871)
chr1 (186-230)||(11405482-11405526)
chr1 (186-257)||(31965538-31965610)
[»] chr7 (12 HSPs)
chr7 (184-262)||(44409225-44409303)
chr7 (184-257)||(10020466-10020540)
chr7 (184-254)||(35195867-35195938)
chr7 (159-230)||(43635587-43635658)
chr7 (186-263)||(7162659-7162737)
chr7 (186-243)||(24304294-24304352)
chr7 (185-257)||(39524713-39524785)
chr7 (211-262)||(3246481-3246533)
chr7 (184-262)||(11808062-11808142)
chr7 (150-257)||(23799290-23799398)
chr7 (184-262)||(16814721-16814800)
chr7 (164-252)||(24427367-24427456)
[»] chr6 (9 HSPs)
chr6 (161-257)||(14949016-14949114)
chr6 (159-257)||(34524874-34524973)
chr6 (184-230)||(7374075-7374121)
chr6 (184-257)||(30833041-30833115)
chr6 (159-207)||(14339775-14339823)
chr6 (159-257)||(30668181-30668280)
chr6 (184-257)||(1488112-1488186)
chr6 (159-263)||(8175995-8176101)
chr6 (184-257)||(19680245-19680319)
[»] chr8 (13 HSPs)
chr8 (159-257)||(7345427-7345526)
chr8 (159-257)||(25470843-25470942)
chr8 (192-248)||(574257-574313)
chr8 (184-257)||(22847259-22847333)
chr8 (186-243)||(35301174-35301232)
chr8 (186-219)||(33570465-33570498)
chr8 (159-262)||(220354-220458)
chr8 (159-262)||(689509-689613)
chr8 (159-262)||(733977-734081)
chr8 (159-262)||(857873-857977)
chr8 (186-234)||(13106391-13106439)
chr8 (159-254)||(18577112-18577208)
chr8 (186-230)||(43468730-43468774)
[»] scaffold0168 (1 HSPs)
scaffold0168 (159-257)||(34030-34129)


Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 16 - 292
Target Start/End: Original strand, 30032669 - 30032944
Alignment:
Q  16 ataattaatgataataaaatgccaattttgattattgaagaagactagattcgat-gaaattgactagccttaatatgcgttatattaattaaaatttgg 114  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30032669 ataattaatgattataaaatgccaattttgattattgaagaagactagattcgatagaaattgactagccttaatatgcgttatattaattaaaatttgg 30032768  T
Q  115 taggtaaaatataagtaatagtagtgattaataaaatacatcttcgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggtt 214  Q
    |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||    
T  30032769 taggtaaaatgtaagtaatagtagtgattaataaaatacatctccgtgagcataactcagctgccaaagacatgcattgttatatgcatggatcggggtt 30032868  T
Q  215 cgaactccgaacacccaattattcacttt-gaaaaaggtgaattttaactgatgatagactacttataaaagaatacat 292  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||     ||| |||||||||||||||||||||    
T  30032869 cgaactccgaacacccaattattcactttaaaaaaaggtgaattttaac---caataaactacttataaaagaatacat 30032944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 30048916 - 30049035
Alignment:
Q  16 ataattaatgataataaaatgccaattttgattattgaagaagactagattcgat-gaaattgactagccttaatatgcgttatattaattaaaatttgg 114  Q
    ||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30048916 ataattagtgataataaaaggtcaattttgattattgaagaagactagattcgatagaaattgactagccttaatatgcgttatattaattaaaatttgg 30049015  T
Q  115 taggtaaaatataagtaata 134  Q
    ||||||| || |||||||||    
T  30049016 taggtaacatgtaagtaata 30049035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 30063257 - 30063376
Alignment:
Q  16 ataattaatgataataaaatgccaattttgattattgaagaagactagattcgat-gaaattgactagccttaatatgcgttatattaattaaaatttgg 114  Q
    ||||||| ||||||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  30063257 ataattagtgataataaaaggtcaattttgattattgaagaagactagattcgatagaaattgactagccttaatatgcgttatattaattaaaatttgg 30063356  T
Q  115 taggtaaaatataagtaata 134  Q
    ||||||| || |||||||||    
T  30063357 taggtaacatgtaagtaata 30063376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 158 - 262
Target Start/End: Complemental strand, 4419783 - 4419678
Alignment:
Q  158 tcgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaat 256  Q
    ||||||||||||||||| || || | ||||||||||||| ||||| ||| |||||||| ||| | ||||||| || |||||||| |||||||| ||||||    
T  4419783 tcgtgagcataactcagttgtcagagacatgcattgttatatgcaggggccggggttcaaacccagaacacctcatttattcaccttgaaaaaagtgaat 4419684  T
Q  257 tttaac 262  Q
    | ||||    
T  4419683 tctaac 4419678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 160 - 249
Target Start/End: Complemental strand, 56955 - 56865
Alignment:
Q  160 gtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaa 249  Q
    ||||||||||||||| || ||   ||||||||||||| ||||| ||| ||| |||||||||||||||| |||| |||||||| ||||||||    
T  56955 gtgagcataactcagttggcagggacatgcattgttatatgcaagggccggagttcgaactccgaacaccccatttattcaccttgaaaaa 56865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 20610763 - 20610837
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    ||||||||||||| ||||| ||| |||||||||||||||| ||| |||| |||||||| || |||||||||||||    
T  20610763 acatgcattgttatatgcaggggccggggttcgaactccggacatcccacttattcaccttaaaaaaggtgaatt 20610837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 24039911 - 24039982
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaatt 257  Q
    ||||||||||||| |||   |||||||||||||||| ||||||||| || |||||||| ||||||||||||||||    
T  24039911 acatgcattgttatatg---gggtcggggttcgaaccccgaacacctcacttattcaccttgaaaaaggtgaatt 24039982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 124
Target Start/End: Original strand, 30229033 - 30229135
Alignment:
Q  18 aattaatga-taataaaatgccaattttgattattgaagaagactagattcgat-gaaattgactagccttaatatgcgttatattaattaaaatttggt 115  Q
    ||||||||| |||||||| | ||||||||||||||||    || || |||| || |||||||||||||||||||  || ||||||||||||||||| |||    
T  30229033 aattaatgaataataaaaggtcaattttgattattga----gattatattcaatagaaattgactagccttaat--gccttatattaattaaaattaggt 30229126  T
Q  116 aggtaaaat 124  Q
    |||||||||    
T  30229127 aggtaaaat 30229135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 54264927 - 54265026
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaatt 257  Q
    |||||||||| |||||||| || | ||||||||||||| ||| | ||||| |||||| |||  |||||||| || |||||||| ||||||||| ||||||    
T  54264927 cgtgagcatagctcagctggcagaaacatgcattgttatatgtaggggtcagggttcaaacctcgaacacctcacttattcaccttgaaaaagatgaatt 54265026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 262
Target Start/End: Original strand, 55677148 - 55677208
Alignment:
Q  203 tgggtcggggttcgaactccgaacac-ccaattattcactttgaaaaaggtgaattttaac 262  Q
    ||||||||||||||||||||| |||| ||| ||||||||||||||| | ||||||| ||||    
T  55677148 tgggtcggggttcgaactccggacactccacttattcactttgaaataagtgaattctaac 55677208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 33359816 - 33359915
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 257  Q
    |||||||||| ||||| || ||   |||| |||||||| ||||| |||||| ||||||||| | | |||||| | |||||||| ||||||||||||||||    
T  33359816 cgtgagcatagctcagttgacatggacattcattgttatatgcaagggtcgaggttcgaaccctggacaccccacttattcaccttgaaaaaggtgaatt 33359915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 186 - 260
Target Start/End: Complemental strand, 35230364 - 35230289
Alignment:
Q  186 atgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatttta 260  Q
    |||||||| || ||||||||||||||||||||||  || ||| |||| ||||| || |||||| ||||||||||||    
T  35230364 atgcattgctatatgcatgggtcggggttcgaacctcggacaccccacttatttaccttgaaataggtgaatttta 35230289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 257
Target Start/End: Complemental strand, 49039541 - 49039442
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 257  Q
    |||||||||| ||||| || ||   ||||||||||||| ||||| ||   ||||||||||| ||| |||||| | |||||||| ||||||||||||||||    
T  49039541 cgtgagcatagctcagttggcagggacatgcattgttatatgcagggactggggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaatt 49039442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 12585630 - 12585556
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaatt 257  Q
    ||||||||||||| ||| | ||| ||| |||||||| ||||||||| || |||||||  ||||||||||||||||    
T  12585630 acatgcattgttatatgtaagggccggagttcgaaccccgaacacctcacttattcatcttgaaaaaggtgaatt 12585556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 230
Target Start/End: Original strand, 42432032 - 42432078
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacaccc 230  Q
    ||||||||||||| ||||| || | ||||||||||||||||||||||    
T  42432032 acatgcattgttatatgcagggattggggttcgaactccgaacaccc 42432078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 257
Target Start/End: Original strand, 49319391 - 49319492
Alignment:
Q  158 tcgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttg-aaaaaggtgaa 255  Q
    ||||||||||| ||||| || ||   ||||||||| ||| ||||| |||||||||||| ||| ||| ||| |||| |||||||| ||| |||||||||||    
T  49319391 tcgtgagcatagctcagttggcatggacatgcattattatatgcaggggtcggggttccaaccccggacaccccacttattcaccttgaaaaaaggtgaa 49319490  T
Q  256 tt 257  Q
    ||    
T  49319491 tt 49319492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 49743388 - 49743465
Alignment:
Q  186 atgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaattttaac 262  Q
    ||||||| ||| ||||| ||| |||| ||||||| ||| ||||| || ||||| || |||||||||||||||||||||    
T  49743388 atgcattattatatgcaggggccgggattcgaaccccggacacctcacttatttaccttgaaaaaggtgaattttaac 49743465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 36008301 - 36008345
Alignment:
Q  186 atgcattgttaaatgcatgggtcggggttcgaactccgaacaccc 230  Q
    ||||||||||| ||||| ||| |||||||||||| ||||||||||    
T  36008301 atgcattgttatatgcaggggccggggttcgaaccccgaacaccc 36008345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 56531305 - 56531261
Alignment:
Q  186 atgcattgttaaatgcatgggtcggggttcgaactccgaacaccc 230  Q
    ||||||||||| ||||| ||| |||||||||||||||| ||||||    
T  56531305 atgcattgttatatgcaggggccggggttcgaactccggacaccc 56531261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 184 - 260
Target Start/End: Complemental strand, 4529834 - 4529757
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatttta 260  Q
    ||||||||| ||| ||||| ||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  4529834 acatgcattattatatgcaggggtcggagttcgaactccgaacaccccacttattcactttgaaaaaggtgaatttta 4529757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 14307765 - 14307691
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    ||||||||||||| ||||| |||||| ||||||||| ||||||| |||| ||||||||||| ||||| |||||||    
T  14307765 acatgcattgttatatgcaggggtcgaggttcgaaccccgaacaccccacttattcactttaaaaaaagtgaatt 14307691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 260
Target Start/End: Original strand, 36413784 - 36413861
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatttta 260  Q
    ||||||||||||| ||||| ||| ||| |||||||| | | |||||| | ||||||||||||||||||||||||||||    
T  36413784 acatgcattgttatatgcaggggccggagttcgaaccctggacaccccacttattcactttgaaaaaggtgaatttta 36413861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 37065505 - 37065426
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaattttaac 262  Q
    ||||||||||||| |||||  |||||||||||||||||||| |||| || | |||||| || ||||| ||||||||||||    
T  37065505 acatgcattgttatatgcagtggtcggggttcgaactccgatcacctcactaattcaccttaaaaaatgtgaattttaac 37065426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 257
Target Start/End: Complemental strand, 39334977 - 39334878
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    |||||||||||||||| || ||   ||||||||| ||| || || |||  ||||||||||||||  ||| |||| |||||||||||||||||||||||||    
T  39334977 cgtgagcataactcagttggcagggacatgcattattatatacaggggctggggttcgaactccagacatcccacttattcactttgaaaaaggtgaatt 39334878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 185 - 262
Target Start/End: Original strand, 18065279 - 18065357
Alignment:
Q  185 catgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaattttaac 262  Q
    |||||||||||| ||||| |||| | ||||||||| |||||||||  | |||||||| |||||||| ||||||||||||    
T  18065279 catgcattgttatatgcaggggttgaggttcgaaccccgaacaccttacttattcaccttgaaaaatgtgaattttaac 18065357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 23663995 - 23664067
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaattattcactttgaaaaaggtgaatt 257  Q
    ||||||||| ||| ||||| |||| ||||||||||||||  ||||||| |||||||| |||||||| |||||||    
T  23663995 acatgcattattatatgca-gggttggggttcgaactccatacacccatttattcaccttgaaaaaagtgaatt 23664067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 44240133 - 44240084
Alignment:
Q  211 ggttcgaactccgaacacccaattattcactttgaaaaaggtgaatttta 260  Q
    |||||||||||||||| |||| ||||||||||| |||||| |||||||||    
T  44240133 ggttcgaactccgaactcccacttattcactttaaaaaagatgaatttta 44240084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 10602029 - 10602104
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactc-cgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    ||||||||||||| ||||| ||| |||||||||||| | || ||| |||| |||||||||||||||||| ||||||    
T  10602029 acatgcattgttatatgcaggggacggggttcgaacccacggacaccccacttattcactttgaaaaagatgaatt 10602104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 1244593 - 1244667
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 257  Q
    |||| ||||| || ||||| |||| ||||||||||| ||| |||||| | |||||||| ||||||||||||||||    
T  1244593 acatacattgctatatgcaggggtgggggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaatt 1244667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 12206542 - 12206596
Alignment:
Q  204 gggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    |||||||||||||||| ||||||| |||  |||||||| ||||||||||||||||    
T  12206542 gggtcggggttcgaaccccgaacaccccgcttattcaccttgaaaaaggtgaatt 12206596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 25406721 - 25406647
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    ||||||||| ||| ||  |||||||||||||||||||||| ||| |||| |||||||| ||| ||||||| ||||    
T  25406721 acatgcattattatatatatgggtcggggttcgaactccggacaccccacttattcaccttggaaaaggtcaatt 25406647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 26975369 - 26975291
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaattattcactttgaaaaaggtgaattttaac 262  Q
    |||||||||| || |||||  ||  ||||||||||| ||| ||||||| ||||||||||| |||||||| |||| ||||    
T  26975369 acatgcattgctatatgcagaggctggggttcgaaccccggacacccagttattcactttaaaaaaggttaattctaac 26975291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 257
Target Start/End: Original strand, 32256180 - 32256234
Alignment:
Q  204 gggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    |||||||||||||||||||| ||| |||| |||||||| ||||||||| ||||||    
T  32256180 gggtcggggttcgaactccggacatcccacttattcacattgaaaaagttgaatt 32256234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 37123210 - 37123284
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacaccc-aattattcactttgaaaaaggtgaatt 257  Q
    ||||||||| ||| ||||| |||||| | ||||||||||| |||||| | ||||||||||| |||||| ||||||    
T  37123210 acatgcattattatatgcaggggtcgagattcgaactccggacaccctacttattcactttaaaaaagatgaatt 37123284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 259
Target Start/End: Original strand, 407505 - 407578
Alignment:
Q  186 atgcattgttaaatgcatgggtcggggttcgaactccgaacacccaattattcactttgaaaaaggtgaatttt 259  Q
    ||||||||||| ||||| ||||||| |||||||| ||||   |||| |||||||  |||||||| |||||||||    
T  407505 atgcattgttatatgcaagggtcggagttcgaaccccgacaccccatttattcagcttgaaaaaagtgaatttt 407578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 10767016 - 10767056
Alignment:
Q  189 cattgttaaatgcatgggtcggggttcgaactccgaacacc 229  Q
    |||||||| ||| | ||||||||||||||||||||||||||    
T  10767016 cattgttatatgtaggggtcggggttcgaactccgaacacc 10767056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 11133102 - 11133146
Alignment:
Q  186 atgcattgttaaatgcatgggtcggggttcgaactccgaacaccc 230  Q
    ||||||||||| ||||| |||||||||||||||| ||| ||||||    
T  11133102 atgcattgttatatgcaggggtcggggttcgaaccccggacaccc 11133146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 159 - 262
Target Start/End: Original strand, 28951865 - 28951969
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    |||||||||||||||| || || ||||||||||| ||| ||||| ||||| |||||||||| ||||||| |||| |||||||| |||||||| |||||||    
T  28951865 cgtgagcataactcagttggcagatacatgcattattatatgcaggggtcagggttcgaaccccgaacaccccacttattcaccttgaaaaatgtgaatt 28951964  T
Q  258 ttaac 262  Q
     ||||    
T  28951965 ctaac 28951969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 257
Target Start/End: Complemental strand, 24160625 - 24160525
Alignment:
Q  158 tcgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaacac-ccaattattcactttgaaaaaggtgaat 256  Q
    ||||||||||||||||| || || | ||||||| ||||| ||||| |||||||||||||||| ||| |||| ||| ||||||||||| |||||| |||||    
T  24160625 tcgtgagcataactcagttggcagagacatgcactgttatatgcaggggtcggggttcgaaccccggacactccacttattcactttcaaaaagttgaat 24160526  T
Q  257 t 257  Q
    |    
T  24160525 t 24160525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 6054296 - 6054217
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaattttaac 262  Q
    ||||| ||||||| |||||  |||||| |||||||||||||||||| || |||||||| |||||||||||||||| ||||    
T  6054296 acatgtattgttagatgcagaggtcggagttcgaactccgaacacctcacttattcaccttgaaaaaggtgaattctaac 6054217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 159 - 262
Target Start/End: Complemental strand, 3461820 - 3461715
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca--cccaattattcactttgaaaaaggtgaat 256  Q
    |||||||||||||||| || ||   ||||||||||||| ||| | |||| ||||||||||| |||||||  |||| ||||||| |||||| |||||||||    
T  3461820 cgtgagcataactcagttgacagggacatgcattgttatatgtaggggttggggttcgaaccccgaacacccccatttattcattttgaataaggtgaat 3461721  T
Q  257 tttaac 262  Q
    | ||||    
T  3461720 tctaac 3461715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 32080080 - 32080153
Alignment:
Q  185 catgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    |||| ||| ||| ||| |||||||||||||||||| ||||||| |||| |||||||| ||||||||||||||||    
T  32080080 catgaattattatatgtatgggtcggggttcgaaccccgaacaccccacttattcaccttgaaaaaggtgaatt 32080153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 36842188 - 36842265
Alignment:
Q  186 atgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaattttaac 262  Q
    ||||||| |||||| || |||||||||||||||| ||| ||| |||| ||||||||||||||||| ||||||| ||||    
T  36842188 atgcatttttaaattcaggggtcggggttcgaaccccgtacatcccacttattcactttgaaaaaagtgaattctaac 36842265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 42665994 - 42665930
Alignment:
Q  186 atgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaa 249  Q
    ||||||||||||||||| ||||||| |||||||||||| ||| |||| |||||||| ||||||||    
T  42665994 atgcattgttaaatgcaggggtcggagttcgaactccggacaccccacttattcaccttgaaaaa 42665930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 263
Target Start/End: Original strand, 55318041 - 55318121
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaattttaact 263  Q
    ||||| ||||||||||| | |||| ||| ||||||| ||| |||||| | ||||||||||||||||| |||||||||||||    
T  55318041 acatgtattgttaaatgtaggggttgggattcgaaccccggacaccccacttattcactttgaaaaaagtgaattttaact 55318121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 162 - 257
Target Start/End: Complemental strand, 794101 - 794006
Alignment:
Q  162 gagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaattattcactttgaaaaaggtgaatt 257  Q
    ||||||| ||||||||  | | ||||||||||||| ||||  ||| |||| ||||||| ||| ||||||| |||||| |||||||| |||||||||    
T  794101 gagcatagctcagctgatagagacatgcattgttatatgcgggggccgggattcgaaccccggacacccacttattctctttgaaagaggtgaatt 794006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 4045705 - 4045626
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaattttaac 262  Q
    ||||||||||||| ||||| |||||| |||||||||| || ||| |||| |||||||  |||||||||||||||| ||||    
T  4045705 acatgcattgttatatgcaggggtcgaggttcgaacttcggacaccccacttattcatcttgaaaaaggtgaattctaac 4045626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 257
Target Start/End: Complemental strand, 22432978 - 22432908
Alignment:
Q  188 gcattgttaaatgcatgggtcggggttcgaactccgaacac-ccaattattcactttgaaaaaggtgaatt 257  Q
    ||||||||| ||||| ||| |||||||| ||| ||| |||| ||| |||||||||||||||||||| ||||    
T  22432978 gcattgttatatgcaggggccggggttcaaaccccggacactccacttattcactttgaaaaaggtaaatt 22432908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 23237386 - 23237460
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    ||||||||| ||| ||| | ||||||| |||||||||||| ||| ||||  ||||||| ||||||||||||||||    
T  23237386 acatgcattattatatgtaggggtcggagttcgaactccggacatcccacatattcacgttgaaaaaggtgaatt 23237460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 256
Target Start/End: Original strand, 24130558 - 24130656
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaat 256  Q
    |||||||||||||||| || ||   |||| |||||||| ||||| ||| ||||||| |||| ||| ||| |||| |||||||| ||||||||| |||||    
T  24130558 cgtgagcataactcagttggcagggacatacattgttatatgcaggggacggggtttgaaccccggacaccccacttattcaccttgaaaaagttgaat 24130656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 51017814 - 51017887
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 257  Q
    ||||||||||||| ||||| | ||||| |||||||| ||| |||||| | ||||||||||||||||| |||||||    
T  51017814 acatgcattgttatatgcaggagtcggagttcgaac-ccggacaccccacttattcactttgaaaaaagtgaatt 51017887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 260
Target Start/End: Complemental strand, 31902276 - 31902200
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatttta 260  Q
    ||||||||| ||| ||| | |||||||||||||||||||| ||| |||| |||||||| || |||||||| |||||||    
T  31902276 acatgcatttttatatgtaggggtcggggttcgaactccggacaccccacttattcacctt-aaaaaggtaaatttta 31902200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 44592024 - 44592097
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaattattcactttgaaaaaggtgaatt 257  Q
    ||||||||||||| ||||| ||||| | |||| ||  ||||||| | | |||||||| ||||||||||||||||    
T  44592024 acatgcattgttatatgcaggggtcagagttcaaaacccgaacatctacttattcaccttgaaaaaggtgaatt 44592097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 257
Target Start/End: Complemental strand, 21249047 - 21248987
Alignment:
Q  198 atgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 257  Q
    ||||| ||| |||||||||||| | |||||||| | |||||||| ||||||||||||||||    
T  21249047 atgcaggggccggggttcgaaccctgaacaccccacttattcaccttgaaaaaggtgaatt 21248987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 184 - 239
Target Start/End: Original strand, 26583125 - 26583181
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattca 239  Q
    ||||||||| ||| ||||| ||||||||||||||||| || ||||| ||||||||||    
T  26583125 acatgcattattatatgcaggggtcggggttcgaactacggacacctcaattattca 26583181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 32508863 - 32508819
Alignment:
Q  186 atgcattgttaaatgcatgggtcggggttcgaactccgaacaccc 230  Q
    ||||||| ||| ||||| |||||||||||||||| ||||||||||    
T  32508863 atgcattattatatgcaggggtcggggttcgaaccccgaacaccc 32508819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 42271082 - 42271038
Alignment:
Q  186 atgcattgttaaatgcatgggtcggggttcgaactccgaacaccc 230  Q
    ||||||||||| ||||| ||| |||||||||||||||| ||||||    
T  42271082 atgcattgttatatgcaggggccggggttcgaactccggacaccc 42271038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 5e-16; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 28537134 - 28537233
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    |||||||||||||||  || ||   ||||||||||||| ||||||||| |||||||||||| ||| ||| |||| |||||||||||||||| ||||||||    
T  28537134 cgtgagcataactcaattgacatggacatgcattgttatatgcatgggccggggttcgaaccccggacaccccacttattcactttgaaaatggtgaatt 28537233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 27006365 - 27006438
Alignment:
Q  185 catgcattgttaaatgcatgggtcggggttcgaactccgaacac-ccaattattcactttgaaaaaggtgaatt 257  Q
    |||||||||||| ||||  |||||||||||||||||||| |||| ||| |||||||| ||||||||||||||||    
T  27006365 catgcattgttatatgctggggtcggggttcgaactccggacactccacttattcaccttgaaaaaggtgaatt 27006438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 184 - 260
Target Start/End: Complemental strand, 41405159 - 41405082
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacac-ccaattattcactttgaaaaaggtgaatttta 260  Q
    ||||||||||||| ||||| ||||||||||| ||||  |  |||| ||||||||||||||||||||||||||||||||    
T  41405159 acatgcattgttatatgcaagggtcggggttggaaccgcagacactccaattattcactttgaaaaaggtgaatttta 41405082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 32252990 - 32252914
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaatt-attcactttgaaaaaggtgaatttt 259  Q
    ||||||||| ||| ||| | |||||||||||||||| ||  |||||||||| ||||||||||||||| |||||||||    
T  32252990 acatgcattattatatgtaggggtcggggttcgaaccccagacacccaatttattcactttgaaaaatgtgaatttt 32252914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 159 - 262
Target Start/End: Complemental strand, 42553236 - 42553133
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaacac-ccaattattcactttgaaaaaggtgaatt 257  Q
    |||||||||| ||||| || |||  ||||||||||||| ||||| |||||||||||||||| ||| ||||  || |||||||| |||||||| |||||||    
T  42553236 cgtgagcatagctcagttgacaacgacatgcattgttatatgca-gggtcggggttcgaaccccggacactacacttattcaccttgaaaaatgtgaatt 42553138  T
Q  258 ttaac 262  Q
     ||||    
T  42553137 ctaac 42553133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 31556842 - 31556916
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    ||||||||||||| ||||| ||||||| |||||||| ||| ||| |||| |||||||| ||||||| ||||||||    
T  31556842 acatgcattgttatatgcaggggtcggagttcgaaccccggacaccccacttattcaccttgaaaagggtgaatt 31556916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 38040290 - 38040363
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaattattcactttgaaaaaggtgaatt 257  Q
    ||||||||||||| ||||| |||||| ||||||||||| ||   |||| |||||||  ||||||||||||||||    
T  38040290 acatgcattgttatatgcaggggtcgaggttcgaactcggacatcccacttattcatcttgaaaaaggtgaatt 38040363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 183 - 257
Target Start/End: Complemental strand, 42260792 - 42260717
Alignment:
Q  183 tacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    |||||||||||||| ||||| || ||||| ||||||||||| ||| |||| |||||||| || |||||| ||||||    
T  42260792 tacatgcattgttatatgcagggttcgggtttcgaactccggacatcccacttattcacctttaaaaagatgaatt 42260717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 257
Target Start/End: Complemental strand, 31280423 - 31280377
Alignment:
Q  211 ggttcgaactccgaacacccaattattcactttgaaaaaggtgaatt 257  Q
    ||||||||| ||||||||||| |||| ||| ||||||||||||||||    
T  31280423 ggttcgaaccccgaacacccacttatccaccttgaaaaaggtgaatt 31280377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 18872547 - 18872591
Alignment:
Q  186 atgcattgttaaatgcatgggtcggggttcgaactccgaacaccc 230  Q
    ||||||| ||| ||||| |||||||||||||||| ||||||||||    
T  18872547 atgcattattatatgcaggggtcggggttcgaaccccgaacaccc 18872591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 159 - 257
Target Start/End: Complemental strand, 9768905 - 9768806
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    |||||||||| ||||| || ||   ||||||||||||| ||||| |||||||||||||||| ||| ||| |||| |||||||| ||||||||||||||||    
T  9768905 cgtgagcatagctcagttggcagggacatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattcaccttgaaaaaggtgaatt 9768806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 257
Target Start/End: Complemental strand, 2903116 - 2903024
Alignment:
Q  166 ataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    ||||||||| |||||   ||||||||||||| |||||  ||||||||||||||| ||||||| |||| |||||||| |||||||||| |||||    
T  2903116 ataactcagttgccagggacatgcattgttatatgcagaggtcggggttcgaaccccgaacaccccacttattcaccttgaaaaaggagaatt 2903024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 261
Target Start/End: Original strand, 24889170 - 24889242
Alignment:
Q  190 attgttaaatgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaattttaa 261  Q
    ||||||| || || ||| || |||||||||||||||||||| | |||||||||||||||||||||||||||||    
T  24889170 attgttatatacaagggccgaggttcgaactccgaacaccccacttattcactttgaaaaaggtgaattttaa 24889242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 12553217 - 12553292
Alignment:
Q  184 acatgcattgttaaatgcatgggtcgggg-ttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 257  Q
    ||||||||||||| ||||| ||| ||||| ||||||| ||| |||||| | |||||||||||||||||||||||||    
T  12553217 acatgcattgttatatgcaggggccgggggttcgaaccccggacaccccacttattcactttgaaaaaggtgaatt 12553292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 18003815 - 18003914
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    |||||||||| ||||| || ||   ||||||||||||| ||||| ||| |||||||||| | ||||||| |||| |||||||| | ||||||||||||||    
T  18003815 cgtgagcatagctcagttggcagggacatgcattgttatatgcaggggccggggttcgagccccgaacaccccacttattcacctggaaaaaggtgaatt 18003914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 163 - 262
Target Start/End: Original strand, 18646691 - 18646789
Alignment:
Q  163 agcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaattattcactttgaaaaaggtgaattttaac 262  Q
    |||||||||||| || ||   ||||||||||| | ||||| |||| | |||| |||||||||||||||| |||||  |||||||||||||||||| ||||    
T  18646691 agcataactcagttggcatggacatgcattgtgatatgca-gggttgcggtttgaactccgaacacccacttattttctttgaaaaaggtgaattctaac 18646789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 41677059 - 41677158
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    ||||||| || ||||| || || | |||| |||| ||| ||||  |||||||||||||||||||| ||| |||| |||||||| ||||||||||||||||    
T  41677059 cgtgagcgtagctcagttggcagagacattcattattatatgcgggggtcggggttcgaactccggacaccccacttattcaccttgaaaaaggtgaatt 41677158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 50199547 - 50199473
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    ||||||||||||| ||||| ||| |||||||||||| ||| ||| |||| |||||||| ||||||||||| ||||    
T  50199547 acatgcattgttatatgcaggggccggggttcgaaccccggacaccccacttattcaccttgaaaaaggtcaatt 50199473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 186 - 262
Target Start/End: Original strand, 23750176 - 23750253
Alignment:
Q  186 atgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaattttaac 262  Q
    ||||||||||| || ||||||||||||||| ||| | ||||| |||| |||||||  |||||||||||||||| ||||    
T  23750176 atgcattgttatatacatgggtcggggttcaaaccctgaacaccccacttattcatcttgaaaaaggtgaattctaac 23750253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 159 - 255
Target Start/End: Complemental strand, 52961178 - 52961081
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaac-acccaattattcactttgaaaaaggtgaa 255  Q
    |||||||||| ||||| || |||  ||||||||||||| ||||| ||| |||||||||||| ||| ||  |||| |||||||| ||| ||||||||||    
T  52961178 cgtgagcatagctcagttggcaaggacatgcattgttatatgcaggggccggggttcgaaccccggacgccccacttattcacgttggaaaaggtgaa 52961081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 257
Target Start/End: Complemental strand, 11238125 - 11238025
Alignment:
Q  158 tcgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaat 256  Q
    ||||||||||| ||||| || ||   ||||||||| ||| ||||| |||||||||||||||  ||| ||| |||| |||||||  |||||||||||||||    
T  11238125 tcgtgagcatagctcagatggcatggacatgcattattatatgcaggggtcggggttcgaatcccggacaccccacttattcatcttgaaaaaggtgaat 11238026  T
Q  257 t 257  Q
    |    
T  11238025 t 11238025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 257
Target Start/End: Original strand, 33844655 - 33844715
Alignment:
Q  198 atgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 257  Q
    ||||| || ||||||||||||| ||| |||||| | |||||||||||||||||||||||||    
T  33844655 atgcaaggatcggggttcgaaccccggacaccccacttattcactttgaaaaaggtgaatt 33844715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 257
Target Start/End: Complemental strand, 33949323 - 33949263
Alignment:
Q  198 atgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 257  Q
    ||||| || ||||||||||||| ||| |||||| | |||||||||||||||||||||||||    
T  33949323 atgcaaggatcggggttcgaaccccggacaccccacttattcactttgaaaaaggtgaatt 33949263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 42908795 - 42908834
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccg 223  Q
    ||||||||||||| ||||| ||||||||||||||||||||    
T  42908795 acatgcattgttatatgcaggggtcggggttcgaactccg 42908834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 1721164 - 1721238
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaatt 257  Q
    ||||||||||||| ||||| ||| |||| ||||||| ||| ||||| || |||||||| || |||||||||||||    
T  1721164 acatgcattgttatatgcaggggccgggtttcgaaccccggacacctcacttattcaccttaaaaaaggtgaatt 1721238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 3341807 - 3341733
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 257  Q
    ||||||||| ||| ||||| ||| ||||| |||||| ||| |||||| | |||||||| ||||||||||||||||    
T  3341807 acatgcattattatatgcaggggccggggatcgaaccccggacaccccacttattcaccttgaaaaaggtgaatt 3341733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 40454242 - 40454169
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 257  Q
    ||||||||| ||| ||||| ||| |||||||||||||||| |||||||| ||||||||  || ||||||||||||    
T  40454242 acatgcattattatatgcaagggccggggttcgaactccggacacccaacttattcac-ctgcaaaaggtgaatt 40454169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 262
Target Start/End: Complemental strand, 7015758 - 7015678
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaa--ttattcactttgaaaaaggtgaattttaac 262  Q
    ||||||||||||| ||| | |||  | |||||||||||||||||||| |  | |||||| |||||||| ||||||||||||    
T  7015758 acatgcattgttatatgtaggggctgaggttcgaactccgaacaccccacttaattcaccttgaaaaatgtgaattttaac 7015678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 257
Target Start/End: Original strand, 41182803 - 41182871
Alignment:
Q  189 cattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    |||||||| ||||| ||||||||||| |||| ||| ||| |||| |||||||||||| ||||||||||||    
T  41182803 cattgttatatgcaggggtcggggtttgaaccccggacaccccacttattcactttg-aaaaggtgaatt 41182871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 11405482 - 11405526
Alignment:
Q  186 atgcattgttaaatgcatgggtcggggttcgaactccgaacaccc 230  Q
    ||||||||||| ||||| |||||||||||||||| ||| ||||||    
T  11405482 atgcattgttatatgcaggggtcggggttcgaaccccggacaccc 11405526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 257
Target Start/End: Original strand, 31965538 - 31965610
Alignment:
Q  186 atgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaatt 257  Q
    ||||||| ||| ||||| || ||||||||||||||||||||||| || |||||||| ||  |||| |||||||    
T  31965538 atgcattattatatgcagggatcggggttcgaactccgaacacctcacttattcaccttttaaaaagtgaatt 31965610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 44409225 - 44409303
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaattttaac 262  Q
    ||||||||| ||| ||||| |||||||||||||||| ||||||| |||| |||||||| |||||||||||||||| ||||    
T  44409225 acatgcattattatatgcaagggtcggggttcgaac-ccgaacaccccacttattcaccttgaaaaaggtgaattctaac 44409303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 10020540 - 10020466
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaac-acccaattattcactttgaaaaaggtgaatt 257  Q
    ||||||||||||| ||||| |||| ||||||||||| |||||| ||||| |||||||  ||||||||||||||||    
T  10020540 acatgcattgttatatgcaggggttggggttcgaaccccgaacaacccacttattcatcttgaaaaaggtgaatt 10020466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 184 - 254
Target Start/End: Original strand, 35195867 - 35195938
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtga 254  Q
    ||||||||| ||| ||||| ||| |||||||||||| ||||||| |||| |||||||| |||||||||||||    
T  35195867 acatgcattattatatgcaggggccggggttcgaaccccgaacaccccatttattcaccttgaaaaaggtga 35195938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 230
Target Start/End: Original strand, 43635587 - 43635658
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaacaccc 230  Q
    |||||||||||||||| || || | ||||||||||||| |||||  ||||||||||||||| ||| ||||||    
T  43635587 cgtgagcataactcagttggcagaaacatgcattgttatatgcagcggtcggggttcgaaccccggacaccc 43635658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 263
Target Start/End: Complemental strand, 7162737 - 7162659
Alignment:
Q  186 atgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaattttaact 263  Q
    ||||||||||| ||||| |||||||||||||||||| ||| |  ||| |||||||  |||||||||||||||| |||||    
T  7162737 atgcattgttatatgcaggggtcggggttcgaactctgaatattccacttattcatcttgaaaaaggtgaattctaact 7162659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 24304352 - 24304294
Alignment:
Q  186 atgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcacttt 243  Q
    ||||||| ||| ||||| |||||||||||||||||||||||| |||| |||||||||||    
T  24304352 atgcattattatatgcaggggtcggggttcgaactccgaacaccccatttattcacttt 24304294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 185 - 257
Target Start/End: Original strand, 39524713 - 39524785
Alignment:
Q  185 catgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaatt 257  Q
    |||||||||||| ||||| |||| | |||||||| |||||||||| || ||||| |||||||||||||||||||    
T  39524713 catgcattgttatatgcaggggttgaggttcgaa-tccgaacacctcatttatttactttgaaaaaggtgaatt 39524785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 211 - 262
Target Start/End: Complemental strand, 3246533 - 3246481
Alignment:
Q  211 ggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaattttaac 262  Q
    |||||||||||||||||||| | ||||| ||||||||||||||||||| ||||    
T  3246533 ggttcgaactccgaacaccctacttatttactttgaaaaaggtgaattctaac 3246481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 11808062 - 11808142
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattca-ctttgaaaaaggtgaattttaac 262  Q
    ||||||||||||| ||||| |||||||||||||||| ||| ||| |||| ||||||| ||| |||||| ||||||| ||||    
T  11808062 acatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattcaccttagaaaaacgtgaattctaac 11808142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 257
Target Start/End: Original strand, 23799290 - 23799398
Alignment:
Q  150 atacatcttcgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaa 248  Q
    |||||||| |||| | ||||||||| || || | ||||||||||||| ||||| |||||||| |||||||  || ||| |||| |||||| |||| ||||    
T  23799290 atacatctccgtgggtataactcagttggcagagacatgcattgttatatgcaggggtcgggattcgaacctcggacaccccacttattctctttaaaaa 23799389  T
Q  249 aggtgaatt 257  Q
    |||| ||||    
T  23799390 aggttaatt 23799398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 16814721 - 16814800
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacac-ccaattattcactttgaaaaaggtgaattttaac 262  Q
    ||||||||| ||| ||| | |||||||||||||||| ||  |||| ||| ||||||||||||||||| ||||||| ||||    
T  16814721 acatgcattattatatgtaggggtcggggttcgaaccccagacactccacttattcactttgaaaaatgtgaattctaac 16814800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 252
Target Start/End: Original strand, 24427367 - 24427456
Alignment:
Q  164 gcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggt 252  Q
    ||||||||||| || || | ||||||||||||| ||||| |||||  ||||||||| ||||| | |||| |||||||| |||||| ||||    
T  24427367 gcataactcagttggcagagacatgcattgttatatgcaggggtcaaggttcgaaccccgaataccccatttattcaccttgaaataggt 24427456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 257
Target Start/End: Complemental strand, 14949114 - 14949016
Alignment:
Q  161 tgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca--cccaattattcactttgaaaaaggtgaatt 257  Q
    |||||||||||||| || || | |||| |||| ||| |||||  ||||||||||||||||||| |||  |||| |||||||| ||||||||||||||||    
T  14949114 tgagcataactcagttggcagaaacatacattattatatgcagaggtcggggttcgaactccggacacccccatttattcaccttgaaaaaggtgaatt 14949016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 34524874 - 34524973
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    |||||||||| ||||| || ||   ||||||||||||| ||||| ||| |||||||||| | ||||||| |||| |||||||| | ||||||||||||||    
T  34524874 cgtgagcatagctcagttggcagggacatgcattgttatatgcaggggccggggttcgagccccgaacaccccacttattcacctggaaaaaggtgaatt 34524973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 230
Target Start/End: Complemental strand, 7374121 - 7374075
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacaccc 230  Q
    ||||||||||||| ||| ||||||||| |||||||||||||||||||    
T  7374121 acatgcattgttatatgtatgggtcggagttcgaactccgaacaccc 7374075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 30833041 - 30833115
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    ||||||||||||| ||||| |||||||||||||||| ||| ||| |||| |||||| | |||||||||| |||||    
T  30833041 acatgcattgttatatgcaggggtcggggttcgaaccccggacaccccacttattctccttgaaaaaggagaatt 30833115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 159 - 207
Target Start/End: Complemental strand, 14339823 - 14339775
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggt 207  Q
    ||||||||||||||||||| || ||||||||||||||| ||||| ||||    
T  14339823 cgtgagcataactcagctgtcagatacatgcattgttatatgcaggggt 14339775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 257
Target Start/End: Complemental strand, 30668280 - 30668181
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    |||||||||||||||| || || | ||||||||| ||| ||||| ||||| | ||||||||  |||||| |||| |||||||| || ||||| |||||||    
T  30668280 cgtgagcataactcagttggcatagacatgcattattatatgcaggggtcagagttcgaaccacgaacaccccacttattcaccttaaaaaatgtgaatt 30668181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 257
Target Start/End: Original strand, 1488112 - 1488186
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    ||||||||||||| |||||  ||||||||||||||| || |||| |||| |||||||| || |||| ||||||||    
T  1488112 acatgcattgttatatgcagaggtcggggttcgaaccccaaacaccccatttattcaccttaaaaatggtgaatt 1488186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 263
Target Start/End: Original strand, 8175995 - 8176101
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattca-ctttgaaaaaggtgaat 256  Q
    |||||||||| ||||| || || | ||||||||||||| ||||| ||   || |||||||||||||||| |||| ||||||| |||  ||||||||||||    
T  8175995 cgtgagcatagctcagttgacagagacatgcattgttatatgcagggactggtgttcgaactccgaacaccccacttattcaccttaaaaaaaggtgaat 8176094  T
Q  257 tttaact 263  Q
    | |||||    
T  8176095 tctaact 8176101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 19680319 - 19680245
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    ||||||||||||| ||||| | | |||||||||||| ||| ||| |||| |||||| | ||||||||||||||||    
T  19680319 acatgcattgttatatgcaggagccggggttcgaaccccggacaccccacttattctccttgaaaaaggtgaatt 19680245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 257
Target Start/End: Original strand, 7345427 - 7345526
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    |||||||||||||||| || ||   ||||||||| ||| ||||| |||||||| ||| |||||| |||| |||| |||||||| || |||||||||||||    
T  7345427 cgtgagcataactcagttggcagggacatgcattattatatgcaggggtcgggcttccaactccaaacaccccacttattcaccttaaaaaaggtgaatt 7345526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 159 - 257
Target Start/End: Complemental strand, 25470942 - 25470843
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtgaatt 257  Q
    |||||||||||||||| || ||   ||||||||| ||| || |||||||||||||||||||  || ||| |||| |||||||| ||||| ||||||||||    
T  25470942 cgtgagcataactcagttgacaggaacatgcattattatattcatgggtcggggttcgaacctcggacaccccatttattcaccttgaagaaggtgaatt 25470843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 248
Target Start/End: Original strand, 574257 - 574313
Alignment:
Q  192 tgttaaatgcatgggtcggggttcgaactccgaacacccaattattcactttgaaaa 248  Q
    ||||| ||||| |||||||||||||||| ||| ||||||| |||||||| |||||||    
T  574257 tgttatatgcaggggtcggggttcgaaccccggacacccacttattcaccttgaaaa 574313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 257
Target Start/End: Complemental strand, 22847333 - 22847259
Alignment:
Q  184 acatgcattgttaaatgcatgggtcggggttcgaactccgaacacc-caattattcactttgaaaaaggtgaatt 257  Q
    ||||||||||||| ||||| |||||| ||||||||| ||  ||||| || |||||||| || |||||||||||||    
T  22847333 acatgcattgttatatgcaggggtcgaggttcgaaccccacacacctcacttattcaccttaaaaaaggtgaatt 22847259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 243
Target Start/End: Complemental strand, 35301232 - 35301174
Alignment:
Q  186 atgcattgttaaatgcatgggtcggggttcgaactccgaacaccc-aattattcacttt 243  Q
    ||||||| ||| ||||| |||||||||||||||||||| |||||| | |||||||||||    
T  35301232 atgcattattatatgcaggggtcggggttcgaactccggacaccctacttattcacttt 35301174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 219
Target Start/End: Complemental strand, 33570498 - 33570465
Alignment:
Q  186 atgcattgttaaatgcatgggtcggggttcgaac 219  Q
    ||||||||||| ||||||||||||||||||||||    
T  33570498 atgcattgttatatgcatgggtcggggttcgaac 33570465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 262
Target Start/End: Complemental strand, 220458 - 220354
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 257  Q
    |||||||||| ||||| || ||   ||||||| ||||| |||||  |||| |||||||||  ||| |||||| | |||||||| ||||||||||||||||    
T  220458 cgtgagcatagctcagttggcagggacatgcaatgttatatgcagaggtcagggttcgaatcccggacaccccacttattcaccttgaaaaaggtgaatt 220359  T
Q  258 ttaac 262  Q
     ||||    
T  220358 ctaac 220354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 262
Target Start/End: Complemental strand, 689613 - 689509
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 257  Q
    |||||||||| ||||| || ||   ||||||| ||||| |||||  |||| |||||||||  ||| |||||| | |||||||| ||||||||||||||||    
T  689613 cgtgagcatagctcagttggcagggacatgcaatgttatatgcagaggtcagggttcgaatcccggacaccccacttattcaccttgaaaaaggtgaatt 689514  T
Q  258 ttaac 262  Q
     ||||    
T  689513 ctaac 689509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 262
Target Start/End: Complemental strand, 734081 - 733977
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 257  Q
    |||||||||| ||||| || ||   ||||||| ||||| |||||  |||| |||||||||  ||| |||||| | |||||||| ||||||||||||||||    
T  734081 cgtgagcatagctcagttggcagggacatgcaatgttatatgcagaggtcagggttcgaatcccggacaccccacttattcaccttgaaaaaggtgaatt 733982  T
Q  258 ttaac 262  Q
     ||||    
T  733981 ctaac 733977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 262
Target Start/End: Complemental strand, 857977 - 857873
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaacacccaa-ttattcactttgaaaaaggtgaatt 257  Q
    |||||||||| ||||| || ||   ||||||| ||||| |||||  |||| |||||||||  ||| |||||| | |||||||| ||||||||||||||||    
T  857977 cgtgagcatagctcagttggcagggacatgcaatgttatatgcagaggtcagggttcgaatcccggacaccccacttattcaccttgaaaaaggtgaatt 857878  T
Q  258 ttaac 262  Q
     ||||    
T  857877 ctaac 857873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 234
Target Start/End: Complemental strand, 13106439 - 13106391
Alignment:
Q  186 atgcattgttaaatgcatgggtcggggttcgaactccgaacacccaatt 234  Q
    ||||||||||| ||||||||||||| |||| ||| ||| ||||||||||    
T  13106439 atgcattgttatatgcatgggtcggtgttcaaaccccggacacccaatt 13106391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 254
Target Start/End: Original strand, 18577112 - 18577208
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaaca-cccaattattcactttgaaaaaggtga 254  Q
    |||||||||||||||| || ||   ||||| ||||||| ||||| |||||||||||| ||| || ||||   || |||||||| |||||||||||||    
T  18577112 cgtgagcataactcagttgacagggacatgtattgttatatgcaggggtcggggttcaaaccccaaacatttcacttattcaccttgaaaaaggtga 18577208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 43468774 - 43468730
Alignment:
Q  186 atgcattgttaaatgcatgggtcggggttcgaactccgaacaccc 230  Q
    ||||||||||| ||| | |||||||||||||||||||| ||||||    
T  43468774 atgcattgttatatgtaggggtcggggttcgaactccggacaccc 43468730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 257
Target Start/End: Complemental strand, 34129 - 34030
Alignment:
Q  159 cgtgagcataactcagctgccaaatacatgcattgttaaatgcatgggtcggggttcgaactccgaacac-ccaattattcactttgaaaaaggtgaatt 257  Q
    |||||||||| ||||| || ||   ||||||||||||| ||||| ||| ||||||||||| |||| |||| ||| |||||| |||| ||||||| |||||    
T  34129 cgtgagcatagctcagttggcagggacatgcattgttatatgcaggggccggggttcgaattccggacactccacttattctctttaaaaaaggagaatt 34030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University