View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1290_low_22 (Length: 290)
Name: NF1290_low_22
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1290_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 30 - 264
Target Start/End: Original strand, 38400241 - 38400481
Alignment:
| Q |
30 |
gtgacagcagggccaagcatgaataactacatgggtggatggttaccatga------tgatgatgataattaaagctatataaagagagagtgtgaagca |
123 |
Q |
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| T |
38400241 |
gtgacagcagggccaagcatgaataactacatgggtggatggttaccatgatgatgatgatgatgataattaaagctatataaagagagagtgtgaagca |
38400340 |
T |
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| Q |
124 |
tgcatgcataaagatcaatctcactattccaactttcaattttatctcaaaggaaaagggaaataatttgtaatactatcatgtaatgtaattgacttaa |
223 |
Q |
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| T |
38400341 |
tgcatgcataaagatcaatctcactattccaactttcaattttatctcaaagcaaaagggaaataatttgtaatactatcatgtaatgtaattgacttaa |
38400440 |
T |
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| Q |
224 |
ctagctatatcagtgtctacgtaccatgtaggcagaataat |
264 |
Q |
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| T |
38400441 |
ctagctatatcaatgtctacgtaccatgtaggcagaataat |
38400481 |
T |
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