View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1290_low_27 (Length: 262)
Name: NF1290_low_27
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1290_low_27 |
 | |
|
| [»] scaffold0933 (1 HSPs) |
| | |
|
| [»] scaffold1939 (1 HSPs) |
| | |
|
| [»] scaffold0570 (1 HSPs) |
| | |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 42133543 - 42133776
Alignment:
| Q |
1 |
tcatgtttttagctttactattagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42133543 |
tcatgtttttagctttactattagagtagcaattctctagctgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgta |
42133642 |
T |
|
| Q |
101 |
ctcttttgagataatgagaattaagagtttcattcatttctctccaagtcataatatggtatcagatttctctctcatgagagagaagttccgatcctaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42133643 |
ctcttttgagataatgagaattaagagtttcattcatttctctccaagtcataatatggtatcagatttctctctcatgagagagaagttccgatcctaa |
42133742 |
T |
|
| Q |
201 |
ccgttttctgttacggttgtttccgccgcattct |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
42133743 |
ccgttttctgttacggttgtttccgccgcattct |
42133776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 22 - 144
Target Start/End: Complemental strand, 19409904 - 19409782
Alignment:
| Q |
22 |
tagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgtactcttttgagataatgagaat |
121 |
Q |
| |
|
||||||||||||||||| | | ||||||||| ||||||||||||||||||||| ||||||||||| |||||||||| |||||||| | |||||||| |
|
|
| T |
19409904 |
tagagtagcaattctctagtttctagttcacggtacttagcatactttccctcacttgtataaatatcattgtactgcactcttttcatcctatgagaat |
19409805 |
T |
|
| Q |
122 |
taagagtttcattcatttctctc |
144 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
19409804 |
taagagtttcattcatttctctc |
19409782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 167 - 230
Target Start/End: Complemental strand, 23968480 - 23968417
Alignment:
| Q |
167 |
tttctctctcatgagagagaagttccgatcctaaccgttttctgttacggttgtttccgccgca |
230 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
23968480 |
tttctctctcatgtgagagaagttccgatcctaaccgttttctgttacggttgcttccgccgca |
23968417 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 18484225 - 18483992
Alignment:
| Q |
1 |
tcatgtttttagctttactattagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18484225 |
tcatgtttttagctttactattagagtagcaattctctagttgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgta |
18484126 |
T |
|
| Q |
101 |
ctcttttgagataatgagaattaagagtttcattcatttctctccaagtcataatatggtatcagatttctctctcatgagagagaagttccgatcctaa |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18484125 |
ctcttttgacataatgagaattaagagtttcattcatttctctctaagtcataatatggtatcagatttctctctcatgagagagaagttccgatcctaa |
18484026 |
T |
|
| Q |
201 |
ccgttttctgttacggttgtttccgccgcattct |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
18484025 |
ccgttttctgttacggttgtttccgccgcattct |
18483992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 1 - 156
Target Start/End: Complemental strand, 18479391 - 18479236
Alignment:
| Q |
1 |
tcatgtttttagctttactattagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
18479391 |
tcatgtttttagctttactattagagtagcaattctctagttgctagttcacagtacttagcatacttttcctcttttgtataaataccattgtactgta |
18479292 |
T |
|
| Q |
101 |
ctcttttgagataatgagaattaagagtttcattcatttctctccaagtcataata |
156 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
18479291 |
ctcttttgacataatgagaattaagagtttcattcatttctctctaagtcataata |
18479236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 151 - 234
Target Start/End: Complemental strand, 38849746 - 38849663
Alignment:
| Q |
151 |
ataatatggtatcagatttctctctcatgagagagaagttccgatcctaaccgttttctgttacggttgtttccgccgcattct |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38849746 |
ataatatggtatcagatttctctctcatgagagagaagttccgatcctaaccgttttctgttacggttgtttccgccgcattct |
38849663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 156
Target Start/End: Complemental strand, 24280299 - 24280256
Alignment:
| Q |
113 |
aatgagaattaagagtttcattcatttctctccaagtcataata |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
24280299 |
aatgagaattaagagtttcattcatttctctctaagtcataata |
24280256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 14507139 - 14506927
Alignment:
| Q |
22 |
tagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgtactcttttgagataatgagaat |
121 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||||| | |||||||||| |
|
|
| T |
14507139 |
tagagtagcaattctctagttgctagttcacagtatttagcatactttccctctcttgtataaatatcattgtactgtactcttttcatctaatgagaat |
14507040 |
T |
|
| Q |
122 |
taagagtttcattcatttctctccaagtcataatatggtatcagatttctctctcatgagagagaagttccgatcctaaccgttttctgttacggttgtt |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14507039 |
taagagtttcattcatttctctccaagtcataatatggtatcagatttctctctcatgagagagaagttccgatcctaaccgttttctgttacggttgtt |
14506940 |
T |
|
| Q |
222 |
tccgccgcattct |
234 |
Q |
| |
|
||||||||||||| |
|
|
| T |
14506939 |
tccgccgcattct |
14506927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 7 - 212
Target Start/End: Complemental strand, 21032187 - 21031982
Alignment:
| Q |
7 |
ttttagctttactattagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgtactcttt |
106 |
Q |
| |
|
||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21032187 |
ttttagctttactgttagagtagcaattctctagttgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgtactcttt |
21032088 |
T |
|
| Q |
107 |
tgagataatgagaattaagagtttcattcatttctctccaagtcataatatggtatcagatttctctctcatgagagagaagttccgatcctaaccgttt |
206 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
21032087 |
tcagataatgagaattaagagtttcattcatttctctctaagtcatattatggtatcagatttctctctcatgagagagaagttccgattctaaccgttt |
21031988 |
T |
|
| Q |
207 |
tctgtt |
212 |
Q |
| |
|
|||||| |
|
|
| T |
21031987 |
tctgtt |
21031982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 7 - 153
Target Start/End: Original strand, 19873825 - 19873972
Alignment:
| Q |
7 |
ttttagctttacta-ttagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgtactctt |
105 |
Q |
| |
|
||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19873825 |
ttttagctttactggttagagtagcaattctctagttgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgtactctt |
19873924 |
T |
|
| Q |
106 |
ttgagataatgagaattaagagtttcattcatttctctccaagtcata |
153 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19873925 |
tttagataatgagaattaagagtttcattcatttctctctaagtcata |
19873972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 144; Significance: 8e-76; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 8e-76
Query Start/End: Original strand, 22 - 234
Target Start/End: Complemental strand, 28522218 - 28522014
Alignment:
| Q |
22 |
tagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgtactcttttgagataatgagaat |
121 |
Q |
| |
|
||||||||||||||||| | | ||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||||||| | |||||||||| |
|
|
| T |
28522218 |
tagagtagcaattctctagtttctagttcacagtacttagcatactttccctcatttgtataaatatcattgtactgcactcttttcatctaatgagaat |
28522119 |
T |
|
| Q |
122 |
taagagtttcattcatttctctccaagtcataatatggtatcagatttctctctcatgagagagaagttccgatcctaaccgttttctgttacggttgtt |
221 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
28522118 |
taagagtttcattcatttc--------tcataatatggtatcagatttctctctcatgagagagaagttccgatcctaactgttttctgttacggttgtt |
28522027 |
T |
|
| Q |
222 |
tccgccgcattct |
234 |
Q |
| |
|
||||||||||||| |
|
|
| T |
28522026 |
tccgccgcattct |
28522014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 107
Target Start/End: Original strand, 28294705 - 28294790
Alignment:
| Q |
22 |
tagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgtactctttt |
107 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| |
|
|
| T |
28294705 |
tagagtagcaattctctagttgctagttcacagtacttagcatactttccctctattgtataaatatcattgtactacactctttt |
28294790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 28517368 - 28517283
Alignment:
| Q |
22 |
tagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgtactctttt |
107 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| |
|
|
| T |
28517368 |
tagagtagcaattctctagttgctagttcacagtacttagcatactttccctctattgtataaatatcattgtactacactctttt |
28517283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0933 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0933
Description:
Target: scaffold0933; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 3870 - 4025
Alignment:
| Q |
1 |
tcatgtttttagctttactattagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccattgtactgta |
100 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||| | ||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3870 |
tcatgtttttagctttcctattaaagtagcaattctctagttgctagttcacagtaattagcatactttccctcttttatataaataccattgtactgta |
3969 |
T |
|
| Q |
101 |
ctcttt---tgagataatgagaattaagagtttcattcatttctctccaagtcata |
153 |
Q |
| |
|
|||||| | | | |||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
3970 |
ctcttttcataacaaaatgagaattaagagtttcattcatttctctctaagtcata |
4025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1939 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: scaffold1939
Description:
Target: scaffold1939; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 1129 - 1223
Alignment:
| Q |
1 |
tcatgtttttagctttactattagagtagcaattctctggctgctagttcacagtacttagcatactttccctcttttgtataaataccattgta |
95 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1129 |
tcatgtttttagctttactattagagtagcaattctctagctgctagttcacagtacttagcatactttccctcttttgtataaataccattgta |
1223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 151 - 226
Target Start/End: Complemental strand, 17483067 - 17482992
Alignment:
| Q |
151 |
ataatatggtatcagatttctctctcatgagagagaagttccgatcctaaccgttttctgttacggttgtttccgc |
226 |
Q |
| |
|
|||||||||||| ||||||||||||| | |||||||||| ||||||||| ||||||| ||||||||| |||||| |
|
|
| T |
17483067 |
ataatatggtattagatttctctctcccgtgagagaagttttgatcctaactgttttctattacggttgcttccgc |
17482992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 144
Target Start/End: Original strand, 2966 - 2998
Alignment:
| Q |
112 |
taatgagaattaagagtttcattcatttctctc |
144 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
2966 |
taatgagaattaagagattcattcatttctctc |
2998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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