View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1290_low_29 (Length: 254)

Name: NF1290_low_29
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1290_low_29
NF1290_low_29
[»] chr8 (2 HSPs)
chr8 (29-132)||(10896723-10896826)
chr8 (203-249)||(10896605-10896651)
[»] scaffold0022 (1 HSPs)
scaffold0022 (203-249)||(101510-101556)
[»] chr4 (4 HSPs)
chr4 (203-249)||(23733-23779)
chr4 (203-249)||(13914390-13914436)
chr4 (29-124)||(23561-23656)
chr4 (94-124)||(13914283-13914313)
[»] scaffold0191 (1 HSPs)
scaffold0191 (203-249)||(16547-16593)
[»] chr3 (2 HSPs)
chr3 (203-249)||(30160889-30160935)
chr3 (203-249)||(20795008-20795054)
[»] chr2 (4 HSPs)
chr2 (203-249)||(45049914-45049960)
chr2 (29-77)||(45050084-45050132)
chr2 (203-249)||(5242935-5242981)
chr2 (94-124)||(45050037-45050067)
[»] chr1 (2 HSPs)
chr1 (203-249)||(19095772-19095818)
chr1 (207-249)||(8313681-8313723)
[»] scaffold0490 (1 HSPs)
scaffold0490 (203-247)||(9575-9619)
[»] chr6 (2 HSPs)
chr6 (203-249)||(21992269-21992315)
chr6 (203-235)||(22820516-22820548)


Alignment Details
Target: chr8 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 29 - 132
Target Start/End: Complemental strand, 10896826 - 10896723
Alignment:
Q  29 atattgatagacgaaacatgtattcgtcaagttcaatgcatgatgtttggnnnnnnnnnnnnnctttatgttatacatgaccttgatcatagctctctat 128  Q
    ||||| |||||||||||||| |||| ||||||||||||||||||||||||             |||||| ||||||||||||||||||||||||||||||    
T  10896826 atattaatagacgaaacatggattcctcaagttcaatgcatgatgtttggaaaaaggcaaaaactttatcttatacatgaccttgatcatagctctctat 10896727  T
Q  129 agca 132  Q
    ||||    
T  10896726 agca 10896723  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 10896651 - 10896605
Alignment:
Q  203 cttcatatatattataattgatatgtgatgcatttcttcttttctct 249  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  10896651 cttcatatatattctaattgatatgtgatgcatttcttcttttctct 10896605  T

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Target: scaffold0022 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 101556 - 101510
Alignment:
Q  203 cttcatatatattataattgatatgtgatgcatttcttcttttctct 249  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  101556 cttcatatatattctaattgatatgtgatgcatttcttcttttctct 101510  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 23733 - 23779
Alignment:
Q  203 cttcatatatattataattgatatgtgatgcatttcttcttttctct 249  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  23733 cttcatatatattctaattgatatgtgatgcatttcttcttttctct 23779  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 13914390 - 13914436
Alignment:
Q  203 cttcatatatattataattgatatgtgatgcatttcttcttttctct 249  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  13914390 cttcatatatattttaattgatatgtgatgcatttcttcttttctct 13914436  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 124
Target Start/End: Original strand, 23561 - 23656
Alignment:
Q  29 atattgatagacgaaacatgtattcgtcaagttcaatgcatgatgtttggnnnnnnnnnnnnnctttatgttatacatgaccttgatcatagctct 124  Q
    |||||||||||||||||||| |||| |||||||||| || ||||||||||             | |||||||||||||||||||||||||||||||    
T  23561 atattgatagacgaaacatggattcctcaagttcaaggcgtgatgtttggaaaaaggcaaaaacattatgttatacatgaccttgatcatagctct 23656  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 124
Target Start/End: Original strand, 13914283 - 13914313
Alignment:
Q  94 ttatgttatacatgaccttgatcatagctct 124  Q
    |||||||||||||||||||||||||||||||    
T  13914283 ttatgttatacatgaccttgatcatagctct 13914313  T

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Target: scaffold0191 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 16547 - 16593
Alignment:
Q  203 cttcatatatattataattgatatgtgatgcatttcttcttttctct 249  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||    
T  16547 cttcatatataatttaattgatatgtgatgcatttcttcttttctct 16593  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 30160935 - 30160889
Alignment:
Q  203 cttcatatatattataattgatatgtgatgcatttcttcttttctct 249  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  30160935 cttcatatatattctaattgatacgtgatgcatttcttcttttctct 30160889  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 20795008 - 20795054
Alignment:
Q  203 cttcatatatattataattgatatgtgatgcatttcttcttttctct 249  Q
    ||||||| ||||| ||||||||| |||||||||||||||||||||||    
T  20795008 cttcatacatattctaattgatacgtgatgcatttcttcttttctct 20795054  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 45049960 - 45049914
Alignment:
Q  203 cttcatatatattataattgatatgtgatgcatttcttcttttctct 249  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  45049960 cttcatatatattctaattgatatgtgatgcatttattcttttctct 45049914  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 45050132 - 45050084
Alignment:
Q  29 atattgatagacgaaacatgtattcgtcaagttcaatgcatgatgtttg 77  Q
    |||||||||||||||||||| |||| |||||||||| || |||||||||    
T  45050132 atattgatagacgaaacatggattcctcaagttcaaggcgtgatgtttg 45050084  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 5242935 - 5242981
Alignment:
Q  203 cttcatatatattataattgatatgtgatgcatttcttcttttctct 249  Q
    |||| |||||||| |||||  ||||||||||||||||||||||||||    
T  5242935 cttcgtatatattctaatttttatgtgatgcatttcttcttttctct 5242981  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 124
Target Start/End: Complemental strand, 45050067 - 45050037
Alignment:
Q  94 ttatgttatacatgaccttgatcatagctct 124  Q
    |||||||||||||||||||||||||||||||    
T  45050067 ttatgttatacatgaccttgatcatagctct 45050037  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 249
Target Start/End: Complemental strand, 19095818 - 19095772
Alignment:
Q  203 cttcatatatattataattgatatgtgatgcatttcttcttttctct 249  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||||    
T  19095818 cttcatatatattctaattgatacgtgatgcatttcttcttttctct 19095772  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 249
Target Start/End: Original strand, 8313681 - 8313723
Alignment:
Q  207 atatatattataattgatatgtgatgcatttcttcttttctct 249  Q
    ||||||||| ||||||||||||||||||| | |||||||||||    
T  8313681 atatatattctaattgatatgtgatgcatctattcttttctct 8313723  T

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Target: scaffold0490 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 9619 - 9575
Alignment:
Q  203 cttcatatatattataattgatatgtgatgcatttcttcttttct 247  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||    
T  9619 cttcatatatattctaattgatacgtgatgcatttcttcttttct 9575  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 249
Target Start/End: Original strand, 21992269 - 21992315
Alignment:
Q  203 cttcatatatattataattgatatgtgatgcatttcttcttttctct 249  Q
    |||| |||||||| ||||||||| |||||||||||||||||||||||    
T  21992269 cttcgtatatattctaattgatacgtgatgcatttcttcttttctct 21992315  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 203 - 235
Target Start/End: Complemental strand, 22820548 - 22820516
Alignment:
Q  203 cttcatatatattataattgatatgtgatgcat 235  Q
    ||||||||||||| |||||||||||||||||||    
T  22820548 cttcatatatattctaattgatatgtgatgcat 22820516  T

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