View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1290_low_3 (Length: 635)
Name: NF1290_low_3
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1290_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 442; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 11 - 606
Target Start/End: Complemental strand, 5607986 - 5607390
Alignment:
| Q |
11 |
cacagacacagacaccaaccctacgctctgagactagtaatgaattnnnnnnnnnnnngaatgaaggtaatcacatgtgacggtgcccagtgtcggacac |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||| | |||||||||||||| ||||||| ||||||||||| |||||||||| ||||||||||| |
|
|
| T |
5607986 |
cacatacacagacaccaaccctacgctccaacactagtaatgaattaaaaaataaaaagaatgaaagtaatcacatgcgacggtgcccggtgtcggacac |
5607887 |
T |
|
| Q |
111 |
caacacattttagacatcagacacattcaatctgaagtgtcagtgctacgcagcttgtatcaatctaattttgaagagtaggataatcatgtgatggagc |
210 |
Q |
| |
|
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5607886 |
cgacacattttagacaccagacacattcaatctgaagtgtcagtgctacgcagcttgtatcaatctaattttgaagagtaggataatcatgtgatggagc |
5607787 |
T |
|
| Q |
211 |
agctggttgagaatgatttaggacatcatacagaacaagcaagttgaaaactccaggttttgtcagccaagcagtcagcacttctccaggagacaccaat |
310 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
5607786 |
agctggttgagaatgatttaggacatcagacagaacaagcaagttgaaaactccaggttttgtcaaccaagcagtcagcacttctccaggagacaccaat |
5607687 |
T |
|
| Q |
311 |
cttcccaaattattctcataaattctaaagggggagcccatgccatttaggagtgcttcaacagccttttttaaagttccatctccaagcactttactgt |
410 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5607686 |
cttcccaaattattctcataaattctgaagggggagcccatgccatttaggagtgcttcaacagccttttttaaagttccatctccaagcactttactgt |
5607587 |
T |
|
| Q |
411 |
gctttccccagccagttaaaatgctac------nnnnnnnnnnntgaaattgtgatcaacaatttaatcatcttatcttattaatccaattaaatgaaaa |
504 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5607586 |
gctttccccagccagttaaaatgctacaaaaaaaaataaaaaaatgaaattgtgatcaacaatttaatc-----atcttattaatccaattaaatgaaaa |
5607492 |
T |
|
| Q |
505 |
caataaaaaattcataggtagtaaagatccatacttgacaaacttaggcagttgaatgccttgaaaaagagaactatgcaaactgagcaaccatgaatga |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5607491 |
caataaaaaattcataggtagtaaagatccatacttgacaaacttaggcagttgaatgccttgaaaaagagaactatgcaaactgagcaaccatgaatga |
5607392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 198 - 435
Target Start/End: Original strand, 5588173 - 5588410
Alignment:
| Q |
198 |
catgtgatggagcagctggttgagaatgatttaggacatcatacagaacaagcaagttgaaaactccaggttttgtcagccaagcagtcagcacttctcc |
297 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| | |||| | ||||||||| || || || | ||| |
|
|
| T |
5588173 |
catgtgatggagcagcagcttgagaatgatttaggacatcatacagaacaagcagattgaaaatgctgggttgtctcagccaagtagccaacaaatttcc |
5588272 |
T |
|
| Q |
298 |
aggagacaccaatcttcccaaattattctcataaattctaaagggggagcccatgccatttaggagtgcttcaacagccttttttaaagttccatctcca |
397 |
Q |
| |
|
|||||| | |||||||||||| |||| ||| |||||||| || ||||| ||||| |||||||| || |||||| |||| |||||||| || || |
|
|
| T |
5588273 |
aggagaataataccttcccaaattaccctcagcaatcctaaagggtgaccccattccattaaggagtgcctcgacagcccttttcaaagttccgtcaccc |
5588372 |
T |
|
| Q |
398 |
agcactttactgtgctttccccagccagttaaaatgct |
435 |
Q |
| |
|
| |||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
5588373 |
atcactttgctgtgctttccccaaccagttaagatgct |
5588410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 198 - 435
Target Start/End: Original strand, 5593134 - 5593371
Alignment:
| Q |
198 |
catgtgatggagcagctggttgagaatgatttaggacatcatacagaacaagcaagttgaaaactccaggttttgtcagccaagcagtcagcacttctcc |
297 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||| | |||| | ||||||||| || || || | ||| |
|
|
| T |
5593134 |
catgtgatggagcagcagcttgagaatgatttaggacatcatacagaacaagcagattgaaaatgctgggttgtctcagccaagtagccaacaaatttcc |
5593233 |
T |
|
| Q |
298 |
aggagacaccaatcttcccaaattattctcataaattctaaagggggagcccatgccatttaggagtgcttcaacagccttttttaaagttccatctcca |
397 |
Q |
| |
|
|||||| | |||||||||||| |||| ||| |||||||| || ||||| ||||| |||||||| || |||||| |||| |||||||| || || |
|
|
| T |
5593234 |
aggagaataataccttcccaaattaccctcagcaatcctaaagggtgaccccattccattaaggagtgcctcgacagcccttttcaaagttccgtcaccc |
5593333 |
T |
|
| Q |
398 |
agcactttactgtgctttccccagccagttaaaatgct |
435 |
Q |
| |
|
| |||||| |||||||||||||| |||||||| ||||| |
|
|
| T |
5593334 |
atcactttgctgtgctttccccaaccagttaagatgct |
5593371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 606
Target Start/End: Original strand, 5588495 - 5588574
Alignment:
| Q |
527 |
aaagatccatacttgacaaacttaggcagttgaatgccttgaaaaagagaactatgcaaactgagcaaccatgaatgaac |
606 |
Q |
| |
|
|||||||||||| | |||| ||||||||||| | ||||| ||| | || |||||||| | ||||||||||||||||||| |
|
|
| T |
5588495 |
aaagatccatacgtcacaatcttaggcagttcagagccttcaaataaagtactatgcatattgagcaaccatgaatgaac |
5588574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 527 - 606
Target Start/End: Original strand, 5593456 - 5593535
Alignment:
| Q |
527 |
aaagatccatacttgacaaacttaggcagttgaatgccttgaaaaagagaactatgcaaactgagcaaccatgaatgaac |
606 |
Q |
| |
|
|||||||||||| | |||| ||||||||||| | ||||| ||| | || |||||||| | ||||||||||||||||||| |
|
|
| T |
5593456 |
aaagatccatacgtcacaatcttaggcagttcagagccttcaaataaagtactatgcatattgagcaaccatgaatgaac |
5593535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 131 - 159
Target Start/End: Complemental strand, 3580588 - 3580560
Alignment:
| Q |
131 |
acacattcaatctgaagtgtcagtgctac |
159 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
3580588 |
acacattcaatctgaagtgtcagtgctac |
3580560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University