View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1290_low_31 (Length: 251)
Name: NF1290_low_31
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1290_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 11641240 - 11641027
Alignment:
| Q |
1 |
atcactaatatactacatatatcacaccacctttatttttctctcnnnnnnnaaattggaagttgggtgtacgagtctctatcaaatattttccatgata |
100 |
Q |
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| T |
11641240 |
atcactaatatactacatatatcacaccaactttctttttctctctttttt-aaattggaagttgggtgtac------ctatcaaatattttccatgata |
11641148 |
T |
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| Q |
101 |
ttgatgtggagaatgaaaaccctaatggtagaactttttcatgacctttttatcgagagtttgtgtttttatttgaaatgagacacttatgtcttttatt |
200 |
Q |
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| T |
11641147 |
ttgatgtggagaatgaaaaccctaatggta-aactttttcatgacctttttatcgagagtttgtgtttttatttgaaatgagacacttatgtcttttttt |
11641049 |
T |
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| Q |
201 |
ctttatattatgtgtgtatatt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
11641048 |
ctttatattatgtgtgtatatt |
11641027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 128 - 203
Target Start/End: Complemental strand, 11622540 - 11622465
Alignment:
| Q |
128 |
gtagaactttttcatgacctttttatcgagagtttgtgtttttatttgaaatgagacacttatgtcttttattctt |
203 |
Q |
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|||||||||||||||||| ||||||| ||| |||||| ||||||| |||||||| | || |||| ||||||||| |
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| T |
11622540 |
gtagaactttttcatgacatttttatgcagaatttgtgcctttattttaaatgagaaatttttgtcgtttattctt |
11622465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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