View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1290_low_32 (Length: 251)

Name: NF1290_low_32
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1290_low_32
NF1290_low_32
[»] chr1 (5 HSPs)
chr1 (1-244)||(47455040-47455287)
chr1 (3-244)||(10137069-10137314)
chr1 (3-244)||(25845500-25845746)
chr1 (71-244)||(16037432-16037611)
chr1 (132-244)||(11810793-11810906)
[»] chr5 (7 HSPs)
chr5 (3-244)||(26669021-26669266)
chr5 (3-244)||(26940618-26940863)
chr5 (3-244)||(558513-558758)
chr5 (3-244)||(36425384-36425629)
chr5 (3-244)||(36940296-36940541)
chr5 (3-244)||(41998459-41998704)
chr5 (16-244)||(39520142-39520374)
[»] chr2 (9 HSPs)
chr2 (3-244)||(9183524-9183769)
chr2 (3-244)||(17973457-17973702)
chr2 (3-244)||(30652658-30652903)
chr2 (3-244)||(25482876-25483121)
chr2 (3-244)||(25490482-25490727)
chr2 (116-235)||(24536125-24536246)
chr2 (139-244)||(30648083-30648189)
chr2 (188-244)||(15445423-15445480)
chr2 (3-48)||(24536327-24536372)
[»] chr8 (9 HSPs)
chr8 (3-244)||(4241112-4241357)
chr8 (3-241)||(28861353-28861597)
chr8 (126-244)||(17022104-17022223)
chr8 (3-101)||(17022004-17022102)
chr8 (126-244)||(17552541-17552660)
chr8 (3-101)||(17552441-17552539)
chr8 (3-48)||(21960203-21960248)
chr8 (165-244)||(8321497-8321577)
chr8 (3-48)||(8329608-8329654)
[»] chr6 (4 HSPs)
chr6 (3-244)||(16834268-16834513)
chr6 (7-244)||(12796875-12797118)
chr6 (132-235)||(19992515-19992619)
chr6 (58-109)||(2861542-2861593)
[»] chr3 (6 HSPs)
chr3 (3-244)||(8884987-8885232)
chr3 (9-244)||(3674390-3674629)
chr3 (3-244)||(18468956-18469201)
chr3 (3-244)||(23664228-23664473)
chr3 (51-244)||(12969906-12970105)
chr3 (132-243)||(53392176-53392288)
[»] chr4 (7 HSPs)
chr4 (3-244)||(37262670-37262915)
chr4 (3-235)||(13061207-13061444)
chr4 (3-241)||(33467171-33467413)
chr4 (3-245)||(12876081-12876328)
chr4 (67-244)||(19103793-19103976)
chr4 (116-242)||(12316478-12316606)
chr4 (205-244)||(7899013-7899053)
[»] chr7 (2 HSPs)
chr7 (3-203)||(12803025-12803229)
chr7 (51-228)||(10391209-10391393)
[»] scaffold0108 (1 HSPs)
scaffold0108 (74-244)||(21632-21808)
[»] scaffold0060 (1 HSPs)
scaffold0060 (138-244)||(50945-51052)
[»] scaffold0070 (2 HSPs)
scaffold0070 (139-244)||(60363-60469)
scaffold0070 (139-244)||(64565-64671)
[»] scaffold0015 (1 HSPs)
scaffold0015 (3-48)||(212600-212645)
[»] scaffold0061 (2 HSPs)
scaffold0061 (139-244)||(47986-48092)
scaffold0061 (12-48)||(48187-48223)
[»] scaffold0017 (2 HSPs)
scaffold0017 (139-244)||(150541-150647)
scaffold0017 (12-48)||(150410-150446)
[»] scaffold0690 (1 HSPs)
scaffold0690 (167-241)||(7093-7168)


Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 244
Target Start/End: Complemental strand, 47455287 - 47455040
Alignment:
Q  1 aataattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47455287 aataattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccatt 47455188  T
Q  101 gtggtaacg---ctcaaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagta 197  Q
    ||||||| |   ||||| ||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  47455187 gtggtaatgattctcaattttgttatagttgcatactatcacaataaattaacacttcggacaacggtttcacccactaagggtgctcagctagcaagta 47455088  T
Q  198 tcttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||    
T  47455087 tcttattaactttcttcttcactagttttctctagtgttttcatctca 47455040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 10137069 - 10137314
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  10137069 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaatcattctgtgttcgtgccttaattatcgtctctcaccattgt 10137168  T
Q  103 ggtaacg---ctcaaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatc 199  Q
    |||||||   ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||| |||    
T  10137169 ggtaacgattctcaattttgtaatagctgcagactatcacaataaattaacacttcggacaacggtttcacccactgagggttcttagctagcaagcatc 10137268  T
Q  200 ttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||    
T  10137269 ttatcaacttgcttcttcactagttttctctagtgttctcatctca 10137314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 25845500 - 25845746
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    ||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |    
T  25845500 taattctttattaatacgtgcacgatatactttaatcgttccttttagagctctctaatcattatgtgttcgtgccttaattatcgtttctcaccattat 25845599  T
Q  103 ggtaacg---ctcaaat-ttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtat 198  Q
    |||||||   ||||| | ||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| || |||||||||| ||    
T  25845600 ggtaacgattctcaattattgtaatagctgcagactatcacaataaattaacacttcagacaacggtttcacccactaagggttcttagctagcaagcat 25845699  T
Q  199 cttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    ||||| |||||||||| ||||||||||| ||||||||| ||||||||    
T  25845700 cttatcaacttgcttcttcactagttttgtctagtgttctcatctca 25845746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 244
Target Start/End: Original strand, 16037432 - 16037611
Alignment:
Q  71 ttcgtgccttaattatcgtttctcaccattgtggtaacg---ctcaa-atttgtaatagttgcag-actatcacaataaattaacatttcggacaacggt 165  Q
    ||||||||||||||||||| |||  | ||||| ||||||   |||||  |||||||| | ||||| ||||||||||| |||||||||||| | ||| |||    
T  16037432 ttcgtgccttaattatcgtctctttcaattgtagtaacgattctcaatttttgtaatcgctgcagtactatcacaatgaattaacatttctggcaatggt 16037531  T
Q  166 ttcacccactaagggtgctcagctagcaagtatcttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
     | |||||||| |||| |||| | |||||| ||||||| |||||||||| ||||||| ||||||||||||||||||||||    
T  16037532 gtaacccactaggggttctcaaccagcaagcatcttatcaacttgcttcttcactagatttctctagtgttttcatctca 16037611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 244
Target Start/End: Original strand, 11810793 - 11810906
Alignment:
Q  132 actatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatcttattaacttgcttct-cactagttttctcta 230  Q
    ||||||||||| |||||||| ||    |||| |||||| ||||||||||| |||| ||| |||  ||||||| | ||||||||| |||||||||| ||||    
T  11810793 actatcacaatgaattaacacttgtagcaacagtttcatccactaagggttctcaactaacaaacatcttatcatcttgcttcttcactagttttttcta 11810892  T
Q  231 gtgttttcatctca 244  Q
    ||||||||||||||    
T  11810893 gtgttttcatctca 11810906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 180; Significance: 3e-97; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 26669021 - 26669266
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  26669021 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaatcattctgtgttcgtgccttaattatcgtctctcaccattgt 26669120  T
Q  103 ggtaacg---ctcaaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatc 199  Q
    |||||||   ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||| |||    
T  26669121 ggtaacgattctcaattttgtaatagctgcagactatcacaataaattaacacttcggacaacggtttcacccactgagggttcttagctagcaagcatc 26669220  T
Q  200 ttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||    
T  26669221 ttatcaacttgcttcttcactagttttctctagtgttctcatctca 26669266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 26940618 - 26940863
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  26940618 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaatcattctgtgttcgtgccttaattatcgtctctcaccattgt 26940717  T
Q  103 ggtaacg---ctcaaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatc 199  Q
    |||||||   ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||| |||    
T  26940718 ggtaacgattctcaattttgtaatagctgcagactatcacaataaattaacacttcggacaacggtttcacccactgagggttcttagctagcaagcatc 26940817  T
Q  200 ttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||    
T  26940818 ttatcaacttgcttcttcactagttttctctagtgttctcatctca 26940863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 558513 - 558758
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||||||    
T  558513 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaatcattctgtgtttgtgccttaattatcgtctctcaccattgt 558612  T
Q  103 ggtaacg---ctcaaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatc 199  Q
    |||||||   ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||| |||    
T  558613 ggtaacgattctcaattttgtaatagctgcagactatcacaataaattaacacttcggacaacggtttcacccactgagggttcttagctagcaagcatc 558712  T
Q  200 ttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||    
T  558713 ttatcaacttgcttcttcactagttttctctagtgttctcatctca 558758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 36425384 - 36425629
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36425384 taattctttatttgtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 36425483  T
Q  103 ggtaacg---ctcaaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatc 199  Q
    ||||| |   ||||| |||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||| |||    
T  36425484 ggtaatgattctcaattttgtaatagatgcaaactatcacaataaattaacacttcggacaacggtttcacccactgagggttcttagctagcaagcatc 36425583  T
Q  200 ttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||    
T  36425584 ttatcaacttgcttcttcactagttttctctagtgttctcatctca 36425629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 36940541 - 36940296
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  36940541 taattctttatcaatacgtgcacgatatactttaaccgtttcttttagagctctctaatcattctgtgttcgtgccttaattatcgtctctcaccattgt 36940442  T
Q  103 ggtaacg---ctcaaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatc 199  Q
    |||||||   ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || | |||||||| |||    
T  36940441 ggtaacgattctcaattttgtaatagctgcagactatcacaataaattaacacttcggacaacggtttcacccactgagggttcttaactagcaagcatc 36940342  T
Q  200 ttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||    
T  36940341 ttatcaacttgcttcttcactagttttctctagtgttctcatctca 36940296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 41998459 - 41998704
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||    
T  41998459 taattctttatcagtacgtgtacgatatactttaaccgttccttttagagctctctaatcattctgtgttcgtgccttaattaccgtctctcaccattgt 41998558  T
Q  103 ggtaacg---ctcaaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatc 199  Q
    |||||||   ||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||  |||| || |||||||||| |||    
T  41998559 ggtaacgattctcaattttgtaatagctgcagactatcacaataaattaacacttcggacaacggtttcacccactgtgggttcttagctagcaagcatc 41998658  T
Q  200 ttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||    
T  41998659 ttatcaacttgcttcttcactagttttctctagtgttctcatctca 41998704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 39520142 - 39520374
Alignment:
Q  16 gtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgtggtaacg---ctc 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||   |||    
T  39520142 gtacgtgcacgatatactttaaccgttccttttagagctctctaatcattctgtgttcgtgccttaattatcgtctctcaccattgtggtaacgattctc 39520241  T
Q  113 aaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatcttattaacttgct 212  Q
    || ||| |||||| ||||||||||||||| |||| |||| ||||||||||||||||||||||| | ||| || |||||||||| ||||||| ||||||||    
T  39520242 aattttataatagctgcagactatcacaaaaaatcaacacttcggacaacggtttcacccactgaaggttcttagctagcaagcatcttatcaacttgct 39520341  T
Q  213 tc-tcactagttttctctagtgttttcatctca 244  Q
    || ||||||||||| ||||||||| ||||||||    
T  39520342 tcttcactagttttgtctagtgttctcatctca 39520374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 180; Significance: 3e-97; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 9183769 - 9183524
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  9183769 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaatcattctgtgttcgtgccttaattatcgtctctcaccattgt 9183670  T
Q  103 ggtaacg---ctcaaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatc 199  Q
    |||||||   ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||| |||    
T  9183669 ggtaacgaatctcaattttgtaatagctgcagactatcacaataaattaacacttcggacaacggtttcacccactgagggttcttagctagcaagcatc 9183570  T
Q  200 ttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||    
T  9183569 ttatcaacttgcttcttcactagttttctctagtgttctcatctca 9183524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 17973702 - 17973457
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  17973702 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaatcattctgtgttcgtgccttaattatcgtctctcaccattgt 17973603  T
Q  103 ggtaacg---ctcaaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatc 199  Q
    |||||||   ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||| |||    
T  17973602 ggtaacgattctcaattttgtaatagctgcagactatcacaataaattaacacttcggacaacggtttcacccactgagggttcttagctagcaagcatc 17973503  T
Q  200 ttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||    
T  17973502 ttatcaacttgcttcttcactagttttctctagtgttctcatctca 17973457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 30652658 - 30652903
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  30652658 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaatcattctgtgttcgtgccttaattatcgtctctcaccattgt 30652757  T
Q  103 ggtaacg---ctcaaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatc 199  Q
    |||||||   ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||| |||    
T  30652758 ggtaacgattctcaattttgtaatagctgcagactatcacaataaattaacacttcggacaacggtttcacccactgagggttcttagctagcaagcatc 30652857  T
Q  200 ttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||    
T  30652858 ttatcaacttgcttcttcactagttttctctagtgttctcatctca 30652903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 25483121 - 25482876
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||    
T  25483121 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaatcattttgtgttcgtgccttaattatcgtctctcaccattgt 25483022  T
Q  103 ggtaacg---ctcaaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatc 199  Q
    ||||| |   ||||| |||||||||| ||||||||||||||||||||||||| |||    ||| |||| ||||||||||||| |||| |||||||| |||    
T  25483021 ggtaatgattctcaattttgtaatagctgcagactatcacaataaattaacacttctagaaacagttttacccactaagggttctcaactagcaagcatc 25482922  T
Q  200 ttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||    
T  25482921 ttatcaacttgcttcttcactagttttctctagtgttctcatctca 25482876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 25490727 - 25490482
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||||||    
T  25490727 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaatcattttgtgttcgtgccttaattatcgtctctcaccattgt 25490628  T
Q  103 ggtaacg---ctcaaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatc 199  Q
    ||||| |   ||||| |||||||||| ||||||||||||||||||||||||| |||    ||| |||| ||||||||||||| |||| |||||||| |||    
T  25490627 ggtaatgattctcaattttgtaatagctgcagactatcacaataaattaacacttctagaaacagttttacccactaagggttctcaactagcaagcatc 25490528  T
Q  200 ttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||    
T  25490527 ttatcaacttgcttcttcactagttttctctagtgttctcatctca 25490482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 116 - 235
Target Start/End: Complemental strand, 24536246 - 24536125
Alignment:
Q  116 tttgtaatagttgcag-actatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatcttattaacttgcttc 214  Q
    |||||||||| | ||| ||||||||||| |||||||| ||  |  |||||| ||||||||||||||| |||| ||| |||| ||||||| ||||||||||    
T  24536246 tttgtaatagctccagtactatcacaatgaattaacacttatggaaacggtgtcacccactaagggttctcaactaacaagcatcttatcaacttgcttc 24536147  T
Q  215 -tcactagttttctctagtgtt 235  Q
     || ||||||||||||||||||    
T  24536146 ttccctagttttctctagtgtt 24536125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 30648083 - 30648189
Alignment:
Q  139 caataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatcttattaacttgcttct-cactagttttctctagtgtttt 237  Q
    ||||||||||||| ||| |  ||| |||| ||||| |||||||  ||| ||| |||| ||||| | ||||||||||| |||||||||||||||||||| |    
T  30648083 caataaattaacacttctggaaacagttttacccattaagggttttcaactaacaagcatcttctcaacttgcttcttcactagttttctctagtgttct 30648182  T
Q  238 catctca 244  Q
    | |||||    
T  30648183 cgtctca 30648189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 244
Target Start/End: Complemental strand, 15445480 - 15445423
Alignment:
Q  188 ctagcaagtatcttattaacttgcttct-cactagttttctctagtgttttcatctca 244  Q
    |||||||| ||||||| | ||||||||| |||||||||||||||||| | ||||||||    
T  15445480 ctagcaagcatcttatcagcttgcttcttcactagttttctctagtgctctcatctca 15445423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 24536372 - 24536327
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttcctttt 48  Q
    |||||||| |||||||||| || ||| |||||||||||||||||||    
T  24536372 taattcttcatcagtacgtacatgatctactttaaccgttcctttt 24536327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 176; Significance: 6e-95; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 4241357 - 4241112
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  4241357 taattctttatcaatacgtgcacgatatactttaaccgttccttttagagctctctaatcattctgtgttcgtgccttaattatcgtctctcaccattgt 4241258  T
Q  103 ggtaacg---ctcaaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatc 199  Q
    |||||||   ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||| |||    
T  4241257 ggtaacgattctcaattttgtaatagctgcagactatcacaataaattaacacttcggacaacggtttcacccactgagggttcttagctagcaagcatc 4241158  T
Q  200 ttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||    
T  4241157 ttatcaacttgcttcttcactagttttctctagtgttctcatctca 4241112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 3 - 241
Target Start/End: Original strand, 28861353 - 28861597
Alignment:
Q  3 taattctttatcagtacgtgcacgatata--ctttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccatt 100  Q
    |||||||| ||||||||||||||||||||  |||||||||||||||| |||||||| |||||||| |||||||||||||||||| || | ||| ||||||    
T  28861353 taattcttcatcagtacgtgcacgatatatactttaaccgttccttt-agagctctgtaattattttgtgttcgtgccttaattgtcatctcttaccatt 28861451  T
Q  101 gtggtaac---gctcaaatttgtaatagttgcag-actatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagt 196  Q
    ||||||||    ||||| |||||||||||||||| | | ||||||| | |||||| |||   ||||||||||| ||||||||||| ||||  ||| |||     
T  28861452 gtggtaacaattctcaattttgtaatagttgcagtattgtcacaatgatttaacacttcttgcaacggtttcatccactaagggttctcaattagtaaga 28861551  T
Q  197 atcttattaacttgcttc-tcactagttttctctagtgttttcatc 241  Q
    ||||||| |||||||||| |||||||||||||| |||||| |||||    
T  28861552 atcttatcaacttgcttcttcactagttttctcaagtgttatcatc 28861597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 126 - 244
Target Start/End: Original strand, 17022104 - 17022223
Alignment:
Q  126 ttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatcttattaacttgcttc-tcactagttt 224  Q
    ||||||| |||||||| ||||||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| ||||||||||    
T  17022104 ttgcagattatcacaacaaattaacacttaggacaacggtttcacccactaagggttctcagctagcaagcatcttatcaacttgcttcttcactagttt 17022203  T
Q  225 tctctagtgttttcatctca 244  Q
    ||||||||||| ||||||||    
T  17022204 tctctagtgttctcatctca 17022223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 17022004 - 17022102
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattg 101  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||    
T  17022004 taattctttatcagtacatgcacgatatactttaaccgttccttttagaactctctaatcattttgtgttcgtgccttaattatcgtctctcaccattg 17022102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 126 - 244
Target Start/End: Original strand, 17552541 - 17552660
Alignment:
Q  126 ttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatcttattaacttgcttc-tcactagttt 224  Q
    ||||||| |||||||| ||||||||| || |||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| ||||||||||    
T  17552541 ttgcagattatcacaacaaattaacacttaggacaacggtttcacccactaagggttctcagctagcaagcatcttatcaacttgcttcttcactagttt 17552640  T
Q  225 tctctagtgttttcatctca 244  Q
    |||||| |||| ||||||||    
T  17552641 tctctattgttctcatctca 17552660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 17552441 - 17552539
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattg 101  Q
    ||||||||||||||||| || |||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| |||||||||||    
T  17552441 taattctttatcagtacttgtacgatatactttaaccgttccttttagatctctctaatcattttgtgttcgtgccttaattatcgtctctcaccattg 17552539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Original strand, 21960203 - 21960248
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttcctttt 48  Q
    ||||||||||||||||||| || |||||||||||||||||||||||    
T  21960203 taattctttatcagtacgtacatgatatactttaaccgttcctttt 21960248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 165 - 244
Target Start/End: Complemental strand, 8321577 - 8321497
Alignment:
Q  165 tttcacccactaagggtgctcagctagcaagtatcttattaacttgcttct-cactagttttctctagtgttttcatctca 244  Q
    ||||||||||||||| |  ||| ||| |||| ||||| | |||| |||||| |||||||||||||||||||||||||||||    
T  8321577 tttcacccactaaggtttttcaactaacaagcatcttctcaactcgcttcttcactagttttctctagtgttttcatctca 8321497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 8329654 - 8329608
Alignment:
Q  3 taattcttt-atcagtacgtgcacgatatactttaaccgttcctttt 48  Q
    ||||||||| |||||||||| || |||||||||||||||||||||||    
T  8329654 taattctttcatcagtacgtacatgatatactttaaccgttcctttt 8329608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 176; Significance: 6e-95; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 16834513 - 16834268
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||    
T  16834513 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaatcattctgtgttcgtgccttaattatcgtctctcatcattgt 16834414  T
Q  103 ggtaacg---ctcaaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatc 199  Q
    |||||||   ||||| |||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||    
T  16834413 ggtaacgattctcaattttgtaatagctgcagactatcacaaaaaattaacacttcggacaacggtttcacccactaagggttctcagctagcaagcatc 16834314  T
Q  200 ttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    |||| |||||||||| |||||||||||||||| |||| ||||||||    
T  16834313 ttatcaacttgcttcttcactagttttctctaatgttctcatctca 16834268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 7 - 244
Target Start/End: Complemental strand, 12797118 - 12796875
Alignment:
Q  7 tctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattc--tgtgttcgtgccttaattatcgtttctcaccattgtgg 104  Q
    ||||||| ||||| || ||||| ||||||||||||||| |||||||||||||||||||||  ||||||| ||||||||||||| | |||   || |||||    
T  12797118 tctttatgagtacatgtacgatttactttaaccgttcc-tttagagctctctaattattcagtgtgttcatgccttaattatcatctcttttcactgtgg 12797020  T
Q  105 taacg---ctcaaatttgtaatagttgc-agactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatct 200  Q
    ||| |   ||||| |||  |||| | ||   ||||||||||| |||||||| | |   ||| |||||||||||||| |||| ||||  ||||||| || |    
T  12797019 taatgattctcaatttttcaataatcgcgctactatcacaatgaattaacactacttgcaatggtttcacccactaggggttctcaaatagcaagcattt 12796920  T
Q  201 tattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    | |||||||||||| ||||||||||| ||||||||| ||||||||    
T  12796919 tcttaacttgcttcttcactagttttttctagtgttctcatctca 12796875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 235
Target Start/End: Complemental strand, 19992619 - 19992515
Alignment:
Q  132 actatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatcttattaacttgctt-ctcactagttttctcta 230  Q
    ||||||||||| |||||||| ||| ||||||||| | |||||||| |||| |||| |||||||| ||||||| ||| |||||  | |||||||||||||     
T  19992619 actatcacaatgaattaacacttctgacaacggtgttacccactacgggttctcaactagcaagcatcttatcaacatgcttatttactagttttctctg 19992520  T
Q  231 gtgtt 235  Q
    |||||    
T  19992519 gtgtt 19992515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 109
Target Start/End: Complemental strand, 2861593 - 2861542
Alignment:
Q  58 taattattctgtgttcgtgccttaattatcgtttctcaccattgtggtaacg 109  Q
    ||||| |||| ||||||||||||||||||||| ||| |||||||| ||||||    
T  2861593 taattgttctttgttcgtgccttaattatcgtctcttaccattgtagtaacg 2861542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 176; Significance: 6e-95; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 8884987 - 8885232
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  8884987 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaatcattctgtgttcgtgccttaattatcgtctctcaccattgt 8885086  T
Q  103 ggtaacg---ctcaaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatc 199  Q
    |||||||   ||||| |||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||| ||||| || |||||||||| |||    
T  8885087 ggtaacgattctcaattttgtaatagctgcagactatcacagtaaattaacacttcggacaacggtttcacccactgagggttcttagctagcaagcatc 8885186  T
Q  200 ttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||    
T  8885187 ttatcaacttgcttcttcactagttttctctagtgttctcatctca 8885232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 9 - 244
Target Start/End: Original strand, 3674390 - 3674629
Alignment:
Q  9 tttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgtggtaac 108  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||    
T  3674390 tttatcaatacgtgcacgatatactttaaccgttccttttagagctctctaatcattctgtgttcgtgccttaattatcgtctctcaccattgtggtaac 3674489  T
Q  109 g---ctcaaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatcttatta 205  Q
    |   ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||| || |||||||||| ||||||| |    
T  3674490 gattctcaattttgtaatagttgcagactatcacaataaattaacacttcggacaacggtttcacctactgagggttcttagctagcaagcatcttatca 3674589  T
Q  206 acttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    ||||||||| ||||||||||||||||||||| ||||||||    
T  3674590 acttgcttcttcactagttttctctagtgttctcatctca 3674629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 3 - 244
Target Start/End: Original strand, 18468956 - 18469201
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| || ||||||||||||    
T  18468956 taattctttatcagtacgtgcacaatatactttaaccgttccttttagagctctttaatcattctgtgttcgtgccttaattattgtctctcaccattgt 18469055  T
Q  103 ggtaacg---ctcaaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatc 199  Q
    |||||||   ||||| |||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||| ||||| || |||||| ||  |||    
T  18469056 ggtaacgattctcaattttgtaatagctgcagactatcacaataaattaacactttggacaacggtttcacccactgagggttcttagctagaaaacatc 18469155  T
Q  200 ttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    |||| |||||||||| ||||||| ||||||||||||| ||||||||    
T  18469156 ttatcaacttgcttcttcactaggtttctctagtgttctcatctca 18469201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 23664473 - 23664228
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    |||| |||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||    
T  23664473 taatgctttattagtacgtgcacgatatactttaaccattccttttagagctctctaatcattctgtgttcgtgccttaattatcatctctcaccattgt 23664374  T
Q  103 ggtaacg---ctcaaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatc 199  Q
    || ||||   ||||| |||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||| | ||||| || |||||||||| |||    
T  23664373 ggcaacgattctcaattttgtaatagctgcagactatcacaaaaaattaacacttcggacaacggtttcacccattgagggttcttagctagcaagcatc 23664274  T
Q  200 ttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    |||| |||||||||| ||||||||||| ||||||||| ||||||||    
T  23664273 ttatcaacttgcttcttcactagttttgtctagtgttctcatctca 23664228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 51 - 244
Target Start/End: Complemental strand, 12970105 - 12969906
Alignment:
Q  51 agctctctaattattc-tgtgttcgtgccttaattatcgtttctcaccattgtggtaacg---ctcaaatt-tgtaatagttgcag-actatcacaataa 144  Q
    ||||||||||| |||  |||||| || ||||||||||||| |||   |||||| ||||||   ||||| || |||||||| ||||| |||||| |||| |    
T  12970105 agctctctaatcatttatgtgtttgtaccttaattatcgtctcttttcattgtagtaacgattctcaatttatgtaatagctgcagtactatcgcaatga 12970006  T
Q  145 attaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatcttattaacttgcttc-tcactagttttctctagtgttttcatctc 243  Q
    ||||||| | | |||||| |||| | ||||||||| | |||| |||||||| ||||||| |||||||||| ||||||||||||||||||||| |||||||    
T  12970005 attaacact-ctgacaacagttttatccactaaggcttctcaactagcaagcatcttatcaacttgcttcttcactagttttctctagtgttctcatctc 12969907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 132 - 243
Target Start/End: Original strand, 53392176 - 53392288
Alignment:
Q  132 actatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatcttattaacttgcttct-cactagttttctcta 230  Q
    ||||| ||||| |||||||| ||| |  || | |||||||||||| |||  |||| ||| |||  ||||||| |||||| |||| |||||||||||||||    
T  53392176 actataacaatgaattaacacttctggtaaagatttcacccactaggggatctcaactaacaataatcttatcaacttgtttcttcactagttttctcta 53392275  T
Q  231 gtgttttcatctc 243  Q
    |||||||||||||    
T  53392276 gtgttttcatctc 53392288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 3 - 244
Target Start/End: Complemental strand, 37262915 - 37262670
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  37262915 taattctttatcagtacgtgcacgatatactttaatcgttccttttagagctctctaatcattctgtgttcgtgccttaattatcgtctctcaccattgt 37262816  T
Q  103 ggtaacg---ctcaaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatc 199  Q
    || ||||   ||||| |||||||||| ||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||| || |||||||||| |||    
T  37262815 ggcaacgattctcaattttgtaatagctgcagactatcacaaaaaattaacacttcggacaacggtttcacccactgagggttcttagctagcaagcatc 37262716  T
Q  200 ttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    |||| |||||||||| ||||||||||| ||||||||| ||||||||    
T  37262715 ttatcaacttgcttcttcactagttttgtctagtgttctcatctca 37262670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 3 - 235
Target Start/End: Original strand, 13061207 - 13061444
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    ||||||||||||||||| |||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  13061207 taattctttatcagtacatgcatgatatactttaactgttccttttagagctctctaattattttgtgttcgtgccttaattaccgtctctcaccattgt 13061306  T
Q  103 ggtaacg---ctcaa-atttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtat 198  Q
    |||| ||   |||||  |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||| ||    
T  13061307 ggtagcgattctcaatttttgtaatagctgcagactatcacaataaattaacacttcggacaacggtttcacccactaagggttctaagctagcaagcat 13061406  T
Q  199 cttattaacttgcttc-tcactagttttctctagtgtt 235  Q
    ||||| |||||||||| |||||||||||||||||||||    
T  13061407 cttatcaacttgcttcttcactagttttctctagtgtt 13061444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 3 - 241
Target Start/End: Complemental strand, 33467413 - 33467171
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    |||||||| ||||||||||||| | |||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||| ||||||||||||    
T  33467413 taattcttcatcagtacgtgcatgttatactttaaccgttccttttagagctctctggttattctgtgtttgtgccttaattatcgtctctcaccattgt 33467314  T
Q  103 ggtaacg---ctcaaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatc 199  Q
    |||||||   ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||| |||| |||| ||||||| || ||||| |||| |||    
T  33467313 ggtaacgattctcaattttgtaatagctgcagactatcacaataaattaacacttcggacaacgttttcgcccattaagggttctaagctatcaagcatc 33467214  T
Q  200 ttattaacttgcttc-tcactagttttctctagtgttttcatc 241  Q
    |||| |||||||||| ||||||||||||| ||||||| |||||    
T  33467213 ttatcaacttgcttcttcactagttttctttagtgttctcatc 33467171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 3 - 245
Target Start/End: Original strand, 12876081 - 12876328
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||| |||||||||||| ||| ||| ||| ||||    
T  12876081 taattctttatcagtacgtgcacgatttactttaaccgttcc-tttagagctctctaattattatgtgtttgtgccttaattaccgtctcttaccgttgt 12876179  T
Q  103 gg-taacg---ctcaaatttgtaatagttgcag-actatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagta 197  Q
    || |||||   ||||| ||||||||||  |  | ||||||||||||||||||||||   | |||||||||||||||||| |  | |||| |||||||| |    
T  12876180 ggttaacgattctcaattttgtaatagccgttgtactatcacaataaattaacattattggcaacggtttcacccactaggaattctcaactagcaagca 12876279  T
Q  198 tcttattaacttgcttc-tcactagttttctctagtgttttcatctcac 245  Q
    | || | |||||||| | ||||||||||||||||||||| |||||||||    
T  12876280 ttttctcaacttgctccttcactagttttctctagtgttctcatctcac 12876328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 67 - 244
Target Start/End: Original strand, 19103793 - 19103976
Alignment:
Q  67 tgtgttcgtgccttaattatcgtttctcaccattgtggtaacg---ctcaa-atttgtaatagttgcag-actatcacaataaattaacatttcggacaa 161  Q
    ||||||||||||||||||||||| |||  ||||||| ||||||   |||||  ||||||||||||| || ||||||||||| |||||||| |||  ||||    
T  19103793 tgtgttcgtgccttaattatcgtctctttccattgtagtaacgattctcaatttttgtaatagttgtagtactatcacaatgaattaacacttctaacaa 19103892  T
Q  162 cggtttcacccactaagggtgctcagctagcaagtatcttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    |  ||| | ||| |||| || |||| |||||||| ||||||| |||||||||| ||||||||||||||||||||| ||||||||    
T  19103893 caattttatccattaagagttctcaactagcaagaatcttatcaacttgcttcttcactagttttctctagtgttctcatctca 19103976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 116 - 242
Target Start/End: Original strand, 12316478 - 12316606
Alignment:
Q  116 tttgtaatagttgcag-actatcacaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatcttattaacttgcttc 214  Q
    |||||||||| ||||  ||||||||||| |||||||| ||  | ||||  ||| | ||||||||||| |||| |||||||| ||||||| ||||||||||    
T  12316478 tttgtaatagctgcactactatcacaatgaattaacacttatggcaacaattttatccactaagggttctcaactagcaagcatcttatcaacttgcttc 12316577  T
Q  215 -tcactagttttctctagtgttttcatct 242  Q
     ||||||||||||||||||||||||||||    
T  12316578 ttcactagttttctctagtgttttcatct 12316606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 244
Target Start/End: Complemental strand, 7899053 - 7899013
Alignment:
Q  205 aacttgcttct-cactagttttctctagtgttttcatctca 244  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  7899053 aacttgcttcttcactagttttctctagtgttttcatctca 7899013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 3 - 203
Target Start/End: Original strand, 12803025 - 12803229
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagctctctaattattctgtgttcgtgccttaattatcgtttctcaccattgt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||| ||||||||||||    
T  12803025 taattctttatcagtacgtgcacgatatactttaaccgttccttttagagatctctaattattttttgttcgtgccttaattatcgtctctcaccattgt 12803124  T
Q  103 ggtaac---gctcaaatttgtaatagttgcagactatcacaataaattaacatttcggacaacggtttcacccactaagggtgc-tcagctagcaagtat 198  Q
    | ||||    ||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| | | |||||||||| ||    
T  12803125 gctaacaattctcaattttgtaatagctgcagactatcacaataaattaacacttcggacaacggtttcacccactaagggttctttagctagcaagcat 12803224  T
Q  199 cttat 203  Q
    |||||    
T  12803225 cttat 12803229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 228
Target Start/End: Complemental strand, 10391393 - 10391209
Alignment:
Q  51 agctctctaat-tattctgtgttcgtgccttaattatcgtttctcaccattgtggtaacg---ctcaa-atttgtaatagttgcag-actatcacaataa 144  Q
    ||||||||||| | || |||||||||||| ||||||||||  ||  ||||||| ||||||   |||||  |||||||||| ||||| | ||||||||| |    
T  10391393 agctctctaatcttttatgtgttcgtgccgtaattatcgtcgctttccattgtagtaacgattctcaatttttgtaatagctgcagtagtatcacaatga 10391294  T
Q  145 attaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatcttattaacttgcttc-tcactagttttctc 228  Q
    || |||| ||| | |||| || ||||| ||||||||| |||| | | |||| ||||||| || ||||||| | ||||||||||||    
T  10391293 atcaacacttctggcaacagtgtcaccgactaagggttctcaaccaacaagcatcttatcaaattgcttcttaactagttttctc 10391209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0108 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 74 - 244
Target Start/End: Original strand, 21632 - 21808
Alignment:
Q  74 gtgccttaattatcgtttctcaccattgtggtaacg---ctcaaat-ttgtaatagttgcag-actatcacaataaattaacatttcggacaacggtttc 168  Q
    |||||||||| ||||| |||  ||||||| ||||||   ||||| | ||||||||| ||||| ||||||||||| || ||||| ||| |  ||| ||||     
T  21632 gtgccttaataatcgtctcttgccattgtagtaacgattctcaattattgtaatagctgcagtactatcacaatgaactaacacttctggaaacagtttt 21731  T
Q  169 acccactaagggtgctcagctagcaagtatcttattaacttgcttc-tcactagttttctctagtgttttcatctca 244  Q
    ||||| ||||||| |||| |||||||| ||||||| |||||||||| ||||||||||||||||||||| ||||||||    
T  21732 acccattaagggttctcaactagcaagcatcttatcaacttgcttcttcactagttttctctagtgttatcatctca 21808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 51052 - 50945
Alignment:
Q  138 acaataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatcttattaacttgcttct-cactagttttctctagtgttt 236  Q
    ||||| |||||||| ||| || ||| ||||||||||||||||||  ||| ||| |||| ||||| | ||||| ||||| |||||||||||||||||||||    
T  51052 acaatgaattaacacttctgaaaacagtttcacccactaagggttttcaactaacaagcatcttctcaactttcttcttcactagttttctctagtgttt 50953  T
Q  237 tcatctca 244  Q
    ||||||||    
T  50952 tcatctca 50945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 60363 - 60469
Alignment:
Q  139 caataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatcttattaacttgcttct-cactagttttctctagtgtttt 237  Q
    |||| |||||||| ||| |  ||| ||||||||||||||||||  ||| | | |||| ||||| | ||||||||||| || |||||||||||||||||||    
T  60363 caatgaattaacacttctggaaacagtttcacccactaagggttttcaacaaacaagcatcttctcaacttgcttcttcattagttttctctagtgtttt 60462  T
Q  238 catctca 244  Q
    |||||||    
T  60463 catctca 60469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0070; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 64565 - 64671
Alignment:
Q  139 caataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatcttattaacttgcttct-cactagttttctctagtgtttt 237  Q
    |||| |||||||| ||| |  ||| ||||||||||||||||||  ||| | | |||| ||||| | ||||||||||| || |||||||||||||||||||    
T  64565 caatgaattaacacttctggaaacagtttcacccactaagggttttcaacaaacaagcatcttctcaacttgcttcttcattagttttctctagtgtttt 64664  T
Q  238 catctca 244  Q
    |||||||    
T  64665 catctca 64671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 48
Target Start/End: Complemental strand, 212645 - 212600
Alignment:
Q  3 taattctttatcagtacgtgcacgatatactttaaccgttcctttt 48  Q
    ||||||||||||||||||| || |||||||||||||||||||||||    
T  212645 taattctttatcagtacgtacatgatatactttaaccgttcctttt 212600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 244
Target Start/End: Complemental strand, 48092 - 47986
Alignment:
Q  139 caataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatcttattaacttgcttct-cactagttttctctagtgtttt 237  Q
    |||| |||||||| ||| |  ||| |||||||||| ||||| |  ||| ||| |||| ||||| | ||||||||||| ||||||||||||||||| ||||    
T  48092 caatgaattaacacttctggaaacagtttcacccattaaggattttcaactaacaagcatcttctcaacttgcttcttcactagttttctctagtatttt 47993  T
Q  238 catctca 244  Q
    |||||||    
T  47992 catctca 47986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Complemental strand, 48223 - 48187
Alignment:
Q  12 atcagtacgtgcacgatatactttaaccgttcctttt 48  Q
    |||||||||| || |||||||||||||||||||||||    
T  48223 atcagtacgtacatgatatactttaaccgttcctttt 48187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 139 - 244
Target Start/End: Original strand, 150541 - 150647
Alignment:
Q  139 caataaattaacatttcggacaacggtttcacccactaagggtgctcagctagcaagtatcttattaacttgcttct-cactagttttctctagtgtttt 237  Q
    |||| |||||||| ||| |  ||| |||||||||| ||||| |  ||| ||| |||| ||||| | ||||||||||| ||||||||||||||||| ||||    
T  150541 caatgaattaacacttctggaaacagtttcacccattaaggattttcaactaacaagcatcttctcaacttgcttcttcactagttttctctagtatttt 150640  T
Q  238 catctca 244  Q
    |||||||    
T  150641 catctca 150647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 150410 - 150446
Alignment:
Q  12 atcagtacgtgcacgatatactttaaccgttcctttt 48  Q
    |||||||||| || |||||||||||||||||||||||    
T  150410 atcagtacgtacatgatatactttaaccgttcctttt 150446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 167 - 241
Target Start/End: Original strand, 7093 - 7168
Alignment:
Q  167 tcacccactaagggtgctcagctagcaagtatcttattaacttgcttc-tcactagttttctctagtgttttcatc 241  Q
    ||||||||||||||| |||| |||| ||| ||| ||| |||||| ||| |||||||||||||||| |||| |||||    
T  7093 tcacccactaagggttctcaactagaaagcatcatatcaacttgattcttcactagttttctctaatgttctcatc 7168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University