View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1290_low_5 (Length: 621)
Name: NF1290_low_5
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1290_low_5 |
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| [»] scaffold0769 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 450; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 29 - 574
Target Start/End: Original strand, 29054160 - 29054684
Alignment:
| Q |
29 |
atatcctccggaaagacacagtagaaacagacagcactacagcagaaatggatcaaactgaaaaacaatgaacacaatacaattggatcatctttcattt |
128 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29054160 |
atatcctccggaaagacacagtagaaacagacagcactacagcagaaatggatcaaactgaaaaacaatgaacacagtacaattggatcatctttcattt |
29054259 |
T |
|
| Q |
129 |
gcaaaagctggttcaagatcctctttgattgatcaacttatgtaataatgcaacaagagaggggagcaatctgagctcgagagacatgaacgatctctgg |
228 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29054260 |
gcaaaagctggttcaagatcctctttgattgatcaacttatgtaataatgcaacaagagaggggagcaatctgagctcgagagacatgaacgatctctgg |
29054359 |
T |
|
| Q |
229 |
aacaaattgagagaataaaatacatgatctaagagacagttcgtagtgagatgctcaagcaagttagacagaatcgccacgagtcgagcgagtgggttca |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
29054360 |
aacaaattgagagaataaaatacatgatctaagagacagttcgtag---------------------acagaatcgccacgagtcgagcgagtgggttca |
29054438 |
T |
|
| Q |
329 |
tacccacgagagagtcacgaacaatctgatgaaatttgagttagacacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaataa |
428 |
Q |
| |
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||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29054439 |
tacgcacgagagagtcatgaacaatctgatgaaatttgagttagacacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaataa |
29054538 |
T |
|
| Q |
429 |
tcaccataagtctttacaagaacaacttccatttttgaagtgataaaacctcaaggagtctctaacagcaataatcacattaacaactttagacatatac |
528 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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|
| T |
29054539 |
tcaccataagtctttacaagaacaacttccatttttgaagtgataaaacctcaaggagtctctaacagtaataatcacacaaacaactttagacatatac |
29054638 |
T |
|
| Q |
529 |
aaaatggcattgtgacaatcaccacatattctcaaatttttaaaaa |
574 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
29054639 |
taaatggcattgtgacaatcaccacatattctcaaatttttaaaaa |
29054684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 360 - 574
Target Start/End: Original strand, 34635308 - 34635522
Alignment:
| Q |
360 |
aaatttgagttagacacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaataatcaccataagtctttacaagaacaacttcca |
459 |
Q |
| |
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||||||||||| || | ||||| ||||| ||||||||||| ||||||||||||||||| ||||||||| ||||||||| || ||||| |||||| ||||| |
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| T |
34635308 |
aaatttgagttggaaaggctcagataggatcattgtgaccccttattcccaataatcttagtcaaatagtcaccataaatcattacatgaacaatttcca |
34635407 |
T |
|
| Q |
460 |
tttttgaagtgataaaacctcaaggagtctctaacagcaataatcacattaacaactttagacatatacaaaatggcattgtgacaatcaccacatattc |
559 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| ||| |||| ||||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||| |
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|
| T |
34635408 |
tttttgaagtgatgaaacctgaaggagtctctgacaacaatcatcacatcaacaaccttagccatatacttaatggcattgtgacaatcaccacatattc |
34635507 |
T |
|
| Q |
560 |
tcaaatttttaaaaa |
574 |
Q |
| |
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||||||| ||||||| |
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|
| T |
34635508 |
tcaaattcttaaaaa |
34635522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 423 - 566
Target Start/End: Complemental strand, 29312495 - 29312352
Alignment:
| Q |
423 |
aaataatcaccataagtctttacaagaacaacttccatttttgaagtgataaaacctcaaggagtctctaacagcaataatcacattaacaactttagac |
522 |
Q |
| |
|
||||| ||||||||| || |||||||||||| || ||||||||||||||||||||||||||| ||| |||||| |||||||||| ||||||| |||||| |
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| T |
29312495 |
aaatattcaccataaatcattacaagaacaattttcatttttgaagtgataaaacctcaaggggtcgctaacaacaataatcactctaacaaccttagac |
29312396 |
T |
|
| Q |
523 |
atatacaaaatggcattgtgacaatcaccacatattctcaaatt |
566 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
29312395 |
atatacttaatggcattgtgacaatcaccacatattctcaaatt |
29312352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 609
Target Start/End: Original strand, 29054702 - 29054732
Alignment:
| Q |
579 |
cattcaaattaagtatcccaaatgcaacagc |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
29054702 |
cattcaaattaagtatcccaaatgcaacagc |
29054732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769 (Bit Score: 123; Significance: 7e-63; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 360 - 574
Target Start/End: Complemental strand, 4606 - 4392
Alignment:
| Q |
360 |
aaatttgagttagacacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaataatcaccataagtctttacaagaacaacttcca |
459 |
Q |
| |
|
||||||||||| || | ||||| ||||| ||||||||||| ||||||||||||||||| ||||||||| ||||||||| || ||||| |||||| ||||| |
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|
| T |
4606 |
aaatttgagttggaaaggctcagataggatcattgtgaccccttattcccaataatcttagtcaaatagtcaccataaatcattacatgaacaatttcca |
4507 |
T |
|
| Q |
460 |
tttttgaagtgataaaacctcaaggagtctctaacagcaataatcacattaacaactttagacatatacaaaatggcattgtgacaatcaccacatattc |
559 |
Q |
| |
|
||||||||||||| |||||| ||||||||||| ||| |||| ||||||| |||||| |||| ||||||| ||||||||||||||||||||||||||||| |
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|
| T |
4506 |
tttttgaagtgatgaaacctgaaggagtctctgacaacaatcatcacatcaacaaccttagccatatacttaatggcattgtgacaatcaccacatattc |
4407 |
T |
|
| Q |
560 |
tcaaatttttaaaaa |
574 |
Q |
| |
|
||||||| ||||||| |
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|
| T |
4406 |
tcaaattcttaaaaa |
4392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 119; Significance: 2e-60; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 360 - 574
Target Start/End: Complemental strand, 28744043 - 28743829
Alignment:
| Q |
360 |
aaatttgagttagacacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaataatcaccataagtctttacaagaacaacttcca |
459 |
Q |
| |
|
|||||||||||||||| |||| ||||| | || || ||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
28744043 |
aaatttgagttagacaaactcagataggattatcgtcaccacttaatcccaataatctgattcaaataatcaccataagtctttacaagaacaatttcca |
28743944 |
T |
|
| Q |
460 |
tttttgaagtgataaaacctcaaggagtctctaacagcaataatcacattaacaactttagacatatacaaaatggcattgtgacaatcaccacatattc |
559 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||| |||| || ||| ||||| |||||||||||| ||||||||||||||||||||| ||||||| |
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|
| T |
28743943 |
tttttgaagtgatgaaacctcaaggagtctctgacaacaattataacaccgacaaccttagacatatacttaatggcattgtgacaatcaccgcatattc |
28743844 |
T |
|
| Q |
560 |
tcaaatttttaaaaa |
574 |
Q |
| |
|
||||||| ||||||| |
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|
| T |
28743843 |
tcaaattcttaaaaa |
28743829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 416 - 574
Target Start/End: Original strand, 13792255 - 13792413
Alignment:
| Q |
416 |
ctgagtcaaataatcaccataagtctttacaagaacaacttccatttttgaagtgataaaacctcaaggagtctctaacagcaataatcacattaacaac |
515 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||| |||||||||||||||||| |||||||||||||||||| || |||| ||||| |||||| |
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|
| T |
13792255 |
ctgagtcaaataatcaccaaaaatctttacaagaacaatttccatttttgaagtgatgaaacctcaaggagtctctgacgacaatcgtcacaccaacaac |
13792354 |
T |
|
| Q |
516 |
tttagacatatacaaaatggcattgtgacaatcaccacatattctcaaatttttaaaaa |
574 |
Q |
| |
|
|| ||||||||| ||||||||| |||||||||||||||||||||||||| ||||||| |
|
|
| T |
13792355 |
attggacatatacttaatggcattatgacaatcaccacatattctcaaattcttaaaaa |
13792413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 428
Target Start/End: Original strand, 13792094 - 13792149
Alignment:
| Q |
373 |
acacgctcaaatagggtcattgtgacctcttattcccaataatctgagtcaaataa |
428 |
Q |
| |
|
|||| |||| ||||| |||||||||| |||||||||||||||| ||||||||||| |
|
|
| T |
13792094 |
acacactcagataggatcattgtgacgacttattcccaataatccgagtcaaataa |
13792149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 579 - 609
Target Start/End: Original strand, 13792432 - 13792462
Alignment:
| Q |
579 |
cattcaaattaagtatcccaaatgcaacagc |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
13792432 |
cattcaaattaagtatcccaaatgcaacagc |
13792462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 30032213 - 30032174
Alignment:
| Q |
64 |
actacagcagaaatggatcaaactgaaaaacaatgaacac |
103 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||||| |
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|
| T |
30032213 |
actacagcagaaatggatcgaactgaaaatcaatgaacac |
30032174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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