View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1290_low_6 (Length: 617)
Name: NF1290_low_6
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1290_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 105 - 607
Target Start/End: Original strand, 2272286 - 2272788
Alignment:
| Q |
105 |
tattttgcatcctgatttggctggtgctgttgactatgcttgtagtttatcaaattgtactacattgggatatggttcttgtaatggtttgagtcttctt |
204 |
Q |
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| T |
2272286 |
tattttgcatcctgatttggctggtgctgttgactatgcttgtagtttatcaaattgtactacattgggatatggttcttgtaatggtttgagtcttctt |
2272385 |
T |
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| Q |
205 |
gtgcatttaatatgtattgtcaagtgaataatcagaaaggattggaattgagacttctctggtttggctattttacagatcatgattcatgatccatcag |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272386 |
gtgcatttaatatgtattgtcaagtgaataatcagaaaggattggaattgagacttctctggtttggctattttacagatcatgattcatgatccatcag |
2272485 |
T |
|
| Q |
305 |
aaagttttgctcaaggattcacacaaatccaagaggaatctatctgtttaattcatctgactagtttataattattgaattgacggtggaaattgattca |
404 |
Q |
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| T |
2272486 |
aaagttttgctcaaggattcacacaaatccaagaggaatctatctgtttaattcatctgactagtttataattattgaattgacggtggaaattgattca |
2272585 |
T |
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| Q |
405 |
tctttatcctcgctctaggaatgtagaataatttacgagatttggctcggtgtctaattttaccattctttttcataaatagcagaagaatgaataatgt |
504 |
Q |
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| T |
2272586 |
tctttatcctcgctctaggaatgtagaataatttacgagatttggctcggtgtctaattttaccattctttttcataaatagcagaagaatgaataatgc |
2272685 |
T |
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| Q |
505 |
ttaaggacagacttaatgttcgtgtccaagacaaagtgaatatatgttgatgttcatatcagtttattaatttgaattgtctagcttttcaattggttct |
604 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2272686 |
ttaaggacagacttaatgttcgtgtccaagacaaagtgaatatatgttgatgttcatatcagtttattaatttgaattgtctagcttttcaattggttct |
2272785 |
T |
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| Q |
605 |
gtg |
607 |
Q |
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| T |
2272786 |
gtg |
2272788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 351 - 425
Target Start/End: Complemental strand, 40772552 - 40772478
Alignment:
| Q |
351 |
tttaattcatctgactagtttataattattgaattgacggtggaaattgattcatctttatcctcgctctaggaa |
425 |
Q |
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|||||| ||||||||||||||| | ||||||||||||| ||||||||||||| ||||||| |||||| |||||| |
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| T |
40772552 |
tttaatccatctgactagtttacagttattgaattgacaatggaaattgattcctctttattctcgctttaggaa |
40772478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 119 - 275
Target Start/End: Original strand, 46353776 - 46353947
Alignment:
| Q |
119 |
atttggctggtgctgttgactatgcttgtagtttatcaaattgtactacattgggatatgg---ttcttgtaatggtttgagtctt-------------c |
202 |
Q |
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||||||||||| | |||| ||||| ||||| |||||| |||||||| |||| |||||||| |||||||||||||||||||||| | |
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| T |
46353776 |
atttggctggtagtattgattatgcatgtagcttatcagattgtactgcattaggatatggatcttcttgtaatggtttgagtcttgaagggaatgcttc |
46353875 |
T |
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| Q |
203 |
ttgtgcatttaatatgtattgtcaagtgaataatcagaaaggattggaattgagacttctctggtttggctat |
275 |
Q |
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| T |
46353876 |
ttatgcatttaatatgtattatcaagtgcataatcag-aaggattgggattgtgatttttcaggtttggctat |
46353947 |
T |
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