View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1290_low_8 (Length: 537)
Name: NF1290_low_8
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1290_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 197 - 510
Target Start/End: Complemental strand, 488566 - 488251
Alignment:
| Q |
197 |
ctctgtcctcaatcaaaagaagcagttgtatatgaagagttctgtcaagtacgttattccaataaaaatttcataggctctttgaatgtcaatggaaaca |
296 |
Q |
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| T |
488566 |
ctctgtcctcaatcaaaagaagcagttgtatatgaagagttctgtcaagtacgttattccaataaaaatttcataggctctttgaatgtcaatggaaaca |
488467 |
T |
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| Q |
297 |
ttggaaaagataatgtacagaatatttcggagcccgtaaaatttgagtcttctgtgaataagttgttgaatggtcttaccaagatagcatcttttaatgt |
396 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
488466 |
ttggaaaagataatgtacagaatatttcggagcctgtaaaatttgagacttctgtgaataagttgttgaatggtcttaccaagatagcatcttttaatgt |
488367 |
T |
|
| Q |
397 |
ttctgctaatatgtatgctactggagaagtaccctttgaagataaaacaatatatgccttagtgca--gcaccacagatctagcagctaatgattgcagt |
494 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||| |
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| T |
488366 |
ttctgctaatatgtatgctactggagaagtaccctttgaagataaaacaatatatgccttagtgcagtgtaccagagatctagcagctaatgattgcagt |
488267 |
T |
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| Q |
495 |
aggtgtctactaagtg |
510 |
Q |
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| T |
488266 |
aggtgtctactaagtg |
488251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 83 - 212
Target Start/End: Complemental strand, 35070236 - 35070107
Alignment:
| Q |
83 |
cacagaccaccaaatccatctattcccaaattccgcccccgtcaatgttcatgcttaccgctatccctactaccaaaaaacagaaattgaaaaacaagtc |
182 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
35070236 |
cacagaccaccaaatccatctcctcccaaattccgcccccgtcaatgttcgtccttaccgctatccctactaccaaaaaacagaaattgaaaaacaggtt |
35070137 |
T |
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| Q |
183 |
agcgaactcttatcctctgtcctcaatcaa |
212 |
Q |
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| T |
35070136 |
agcgaactattatcctctggcctcattcaa |
35070107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 83 - 207
Target Start/End: Original strand, 22259991 - 22260115
Alignment:
| Q |
83 |
cacagaccaccaaatccatctattcccaaattccgcccccgtcaatgttcatgcttaccgctatccctactaccaaaaaacagaaattgaaaaacaagtc |
182 |
Q |
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|||||| |||||||||||||| | |||||||||||||||||||| |||| | ||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
22259991 |
cacagatcaccaaatccatctcctaccaaattccgcccccgtcaacgttcgtccttaccgctatccctactaccgaaaaacagaaattgaaaaacaagtc |
22260090 |
T |
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| Q |
183 |
agcgaactcttatcctctgtcctca |
207 |
Q |
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||||||||||||||||||| ||||| |
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| T |
22260091 |
agcgaactcttatcctctggcctca |
22260115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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