View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1290_low_9 (Length: 518)
Name: NF1290_low_9
Description: NF1290
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1290_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 8 - 480
Target Start/End: Original strand, 28896257 - 28896750
Alignment:
| Q |
8 |
catcacagaccaaattgtatataata---tacacaaataagactaatcaataattatcatagaagatagattaagatgcttctaggaccacagtccacaa |
104 |
Q |
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| T |
28896257 |
catcaccgaccaaattgtatataataatatacacaaataagactaatcaataattatcatagaagatagatgaagatgcttctaggaccacagtccacaa |
28896356 |
T |
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| Q |
105 |
acagacatagtactagtactttttgaataaataa----------------ataacaatagcaaaacaacaaacattggaaccagaacaaataatatgatg |
188 |
Q |
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| T |
28896357 |
aaaaacatagtaccagtactttttgaataaataataaataaatcaaataaataacaatagcaaaacaacaaacattggaaccagaacaaataatatgatg |
28896456 |
T |
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| Q |
189 |
aaggtaatgacatcgatcatatcataatgctgattatagtaatttactgtattttatttcaccaccacatgataagagtattagaaaagtcaaaagataa |
288 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
28896457 |
aaggtaatgacatcgatcatatcataatgctgattatagtaatttactgtattttatttcaccaccacatgataagaatattagaaaagtcaaaagataa |
28896556 |
T |
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| Q |
289 |
ttcatagccttatcttcttagtaagtcggtttgacactatttctctaagcagtgataataaccatgaatt-----cttgtttagctaaaattaattatta |
383 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||| |
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| T |
28896557 |
ttcatagccttatctacttaataagtcggtttgacactatttctctaagcagtgataa---ccatgaattaatttcttgtttagctgaaattaattatta |
28896653 |
T |
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| Q |
384 |
aaactttgttatcttagagaacaaactttgttggcaaattcaaacatatgtttatcaaactatagcaaagaagtaaatagaatattgcactatatat |
480 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
28896654 |
aaactttgttatcttagagaacaaactttgttgccaaattcaaacatatgtgtatcaatctatagcaaagaagtaaatagaatattacactatatat |
28896750 |
T |
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