View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1291-Insertion-1 (Length: 441)
Name: NF1291-Insertion-1
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291-Insertion-1 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 40 - 441
Target Start/End: Complemental strand, 29282721 - 29282322
Alignment:
| Q |
40 |
ggttcaggttctggtttaggaactattttcgcttgttttttggttcttctatagacataatccactagcttgtttgcatccattgttcctgtcacagtta |
139 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29282721 |
ggttcaggttcgggtttaggaactattttcgcttgttttttggttcttctatagacataatccactagcttgtttgcatccattgttcctgtcacagtta |
29282622 |
T |
|
| Q |
140 |
ctttccctgtgctaaactctgtcactgctgtttgaactcctacattaatgaataatgtttttacattaattaatgcaaataaatatggcattgattgaat |
239 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29282621 |
ctttccctgtgctaaactctgtcactgctgtttgaactcctacattaatcaataatgtttttacattaattaatgcaaataaatatggcattgattgaat |
29282522 |
T |
|
| Q |
240 |
attagcacactattttgtccagagcatttgattcatggtcaaatggacatgaccatggttttaaactatggtccgaaatgcaatataaaggtgtctgtaa |
339 |
Q |
| |
|
| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29282521 |
actag--tactattttgtcaagagcatttgattcatggtcaaatggacatgaccatggttttaaactatggtccgaaatgcaatataaaggtgtctgtaa |
29282424 |
T |
|
| Q |
340 |
taacatcgcaaccacaattctgaccataatggtcatattttctcataatataacggtttgtggcgtatccacaaccgcggccacagttcaaaacctttct |
439 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29282423 |
taacatcgcaaccacaattctgaccataatggtcatattttctcataatataacggtttgtggcgtatccacaactgcggccacagttcaaaacctttct |
29282324 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 149; Significance: 2e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 40 - 223
Target Start/End: Original strand, 6470271 - 6470455
Alignment:
| Q |
40 |
ggttcaggttctggtttaggaactattttcgcttgttttttggttcttctatagacataatccactagcttgtttgcatccattgttcctgtcacagtta |
139 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6470271 |
ggttcaggttctggtttaggaactatttttgcttgttttttggtttttttatagacataatccactagcttgtttgcatccattgttcctgtcacagtta |
6470370 |
T |
|
| Q |
140 |
ctttccctgtgctaaactctgtcactgctgtttgaactcctacattaatgaata-atgtttttacattaattaatgcaaataaat |
223 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||||||||||||| |||| | |||||||||||||||||||||||||||| |
|
|
| T |
6470371 |
ctttccttgtgctaaactctgccactgctgtttgaactcctacattaatcaatacaagtttttacattaattaatgcaaataaat |
6470455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 40 - 186
Target Start/End: Original strand, 42524926 - 42525072
Alignment:
| Q |
40 |
ggttcaggttctggtttaggaactattttcgcttgttttttggttcttctatagacataatccactagcttgtttgcatccattgttcctgtcacagtta |
139 |
Q |
| |
|
|||||||||||||||| ||||||||||| ||||| ||||| |||| |||||| ||| ||||||||| |||||| | ||||| || || |||||| | | |
|
|
| T |
42524926 |
ggttcaggttctggttgtggaactattttggcttgctttttagttcgtctataaacaaaatccactaacttgttgccgtccatggtccccgtcacaataa |
42525025 |
T |
|
| Q |
140 |
ctttccctgtgctaaactctgtcactgctgtttgaactcctacatta |
186 |
Q |
| |
|
| || ||||||||| ||| ||| || ||||||| |||||||||||| |
|
|
| T |
42525026 |
cctttcctgtgctatgctcagtctctactgtttgtactcctacatta |
42525072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University