View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1291-Insertion-5 (Length: 366)
Name: NF1291-Insertion-5
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1291-Insertion-5 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 7 - 366
Target Start/End: Complemental strand, 1750438 - 1750080
Alignment:
| Q |
7 |
acattactcaattctaacctaatatatgtataaaatctgatcttatgaacatttttcttattgcaaatagatatagagacatagctatgagctcaatgac |
106 |
Q |
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| T |
1750438 |
acattactcaattctaacctaatatatgtatataatctgttcttatgaactttttt-ttattgcaaatagatatagagacatagccatgagctcaatgac |
1750340 |
T |
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| Q |
107 |
attattcttgatattggtcatcttccctatactatacaatttatcagatgatcgtaatttcatggcaaaatataacgttctcctcacggtctttgtcgtc |
206 |
Q |
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| T |
1750339 |
attattcttgatattggtcatcttccctatactatacaatttatcagatgatcgtaatttcatggcaaaatataacgttgtcctcacggtctttgtcgtc |
1750240 |
T |
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| Q |
207 |
ctttttgtttcctgttttcaaataatccttgtttccattacgcgatcacgccctattgataacagcgtctttgggatcttattcttacttgaactatcaa |
306 |
Q |
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| T |
1750239 |
cttcttgtttcctgttttcaaataatgcttgtttccattacgcgatcacgccctattgataacagcgtctttgggatcttattcttacttgaactatcaa |
1750140 |
T |
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| Q |
307 |
gtgtaagttcagtcatagaagttagttatttatcatggactgcggctatcatggttgcga |
366 |
Q |
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| T |
1750139 |
gtgcaacttcaatcgtagaagttagttatttatcatggactgctgctatcatcgttgcga |
1750080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 201 - 355
Target Start/End: Complemental strand, 1754284 - 1754130
Alignment:
| Q |
201 |
gtcgtcctttttgtttcctgttttcaaataatccttgtttccattacgcgatcacgccctattgataacagcgtctttgggatcttattcttacttgaac |
300 |
Q |
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| T |
1754284 |
gtcgtctttcttgtttcctgttatcaatcaaggcttgtttccattaccgtatcgcgccctatcgatcacaacatctttgggatcttattcatacttggac |
1754185 |
T |
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| Q |
301 |
tatcaagtgtaagttcagtcatagaagttagttatttatcatggactgcggctat |
355 |
Q |
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| T |
1754184 |
tatcaagtgcaatttcagtcatggaagttagttttgtatcatggattgctgctat |
1754130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 354
Target Start/End: Complemental strand, 1455927 - 1455830
Alignment:
| Q |
257 |
ccctattgataacagcgtctttgggatcttattcttacttgaactatcaagtgtaagttcagtcatagaagttagttatttatcatggactgcggcta |
354 |
Q |
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| T |
1455927 |
ccctgttgacaacagaatctttgggatcttattcatacttttgctatcaactgcaatttcagtcatagaagttggttttttctcatggactgctgcta |
1455830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 354
Target Start/End: Original strand, 1567418 - 1567515
Alignment:
| Q |
257 |
ccctattgataacagcgtctttgggatcttattcttacttgaactatcaagtgtaagttcagtcatagaagttagttatttatcatggactgcggcta |
354 |
Q |
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| T |
1567418 |
ccctgttgacaacagaatctttgggatcttattcatacttttgctatcaactgcaatttcagtcatagaagttggttttttctcatggactgctgcta |
1567515 |
T |
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