View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1291-Insertion-6 (Length: 761)

Name: NF1291-Insertion-6
Description: NF1291
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1291-Insertion-6
NF1291-Insertion-6
[»] chr7 (1 HSPs)
chr7 (8-761)||(7108261-7109026)


Alignment Details
Target: chr7 (Bit Score: 628; Significance: 0; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 628; E-Value: 0
Query Start/End: Original strand, 8 - 761
Target Start/End: Complemental strand, 7109026 - 7108261
Alignment:
Q  8 tattcaacaaagacaaatcaaagagtgtatcaacctcacttgagaggcaaccgatcttctccataatagatcttttggaggtaatcttgcccttaaaata 107  Q
    ||||||||| ||||||||||||||||| ||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  7109026 tattcaacacagacaaatcaaagagtgcatcaacctcacttgagaggcacccgatcttcgccataatagatcttttggaggtaatcttgcccttaaaata 7108927  T
Q  108 gacatttataaagcttttgacactgtggaatgaaaatttcttttgaagattttgaaagcttttggttttaatgaaaacatttgtaattggatagaggtca 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  7108926 gacatttataaagcttttgacactgtggaatgaaaatttcttttgaagattttgaaagcttttggttttaatgaaaacatttggaattggatagaggtca 7108827  T
Q  208 ttttaaactcatattctctgataatttctctcaatgataagcttcatgattattttcattgtaagagaggggtgaggcaggaatactgtatctatctctc 307  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    |||||||    
T  7108826 ttttaaactcatattgtctgataatttctctcaatgataagcttcatgattattttcattgtaagagaggggtgaggcaggaatactgt----atctctc 7108731  T
Q  308 ctctccttttatgttttgccaaagaggtgatgagcagaagtatttctagattggtggatgaaggtaagctagaccttatcaaggg--------------- 392  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||                   
T  7108730 ctctccttttatgttttgccaaagaggtgatgagcagaggtatttctagattggtggatgaaggtaagctagaccttatcaaggggtccagaaaaccata 7108631  T
Q  393 -gtccagaaaaccatagtaatctcattgattcaaggaatactgatacacaacctgttcttatatggtttgccattttcattgctaaaagatttggagaga 491  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||  ||| |||||||| ||||| |||||||||| |||||||||||||||||    
T  7108630 tgtccagaaaaccatagtaatctcattgattcaaggaatactgatacacaatttgtccttatatgctttgctattttcattgttaaaagatttggagaga 7108531  T
Q  492 agcattaggaacttcatttggagtggggacattgagaagaggaaattagtcattgtggcatggaaaaaatttgtaagccattagaggagggagggttagg 591  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  7108530 agcattaggaacttcatttggagtggggacattgagaagaggaaattagtcattgtggcatgaaaaaaatttgtaagccattagaggaaggagggttagg 7108431  T
Q  592 tattagatatctaatccatcttaatgaagcttataatcttaagctttgttgagagaatggcgtcttctgatacggatcgggcaaagatgttaaggtctag 691  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7108430 tattagatatctaatccatcttaatgaagcttataatcttaagctttgttgggagaatggcgtcttctgatacggattgggcaaagatgttaaggtctag 7108331  T
Q  692 agttttaaaaaacgatagatgtatttcttatcatattttctcctctttatcgagtagttttaaaagtgag 761  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7108330 agttttaaaaaatgatagatgtatttcttatcatattttctcctctttatcgagtagttttaaaagtgag 7108261  T

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