View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12910_high_1 (Length: 1083)
Name: NF12910_high_1
Description: NF12910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12910_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 937; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 937; E-Value: 0
Query Start/End: Original strand, 6 - 1066
Target Start/End: Complemental strand, 181280 - 180220
Alignment:
| Q |
6 |
gacatcatcagtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggggaggcagagcaggtggaagcaagagtagtgggttgat |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||| |
|
|
| T |
181280 |
gacatcattagtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggtgaggcagagcaagtggaagcaagagcagtgggttgat |
181181 |
T |
|
| Q |
106 |
attgagacatataatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtg |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
181180 |
attgagacatataatgaaaggtgtagagatcactgttactggaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtg |
181081 |
T |
|
| Q |
206 |
aaattcaagatatgtattgttagacttgcagaatttcttaacagatatgagactatgtttagcatttgggacacaaagcaccttatttaatttgaaagta |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
181080 |
caattcaagatatgtattgttagacttgcagaatttcttaacatatatgagattatgtttagcatttgggacacaaagcacattatttaatttgaaagta |
180981 |
T |
|
| Q |
306 |
atattgggggtagggagggtaatagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaa |
405 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
180980 |
atatttggggtagggagggtaatagagccaacatgtgaaatattcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaa |
180881 |
T |
|
| Q |
406 |
gctgcatattgttcagatttgatgttatacgatgactggctccagtgtcaaacacccagttaggagcagccgaatgtgaagcagaagcgaaatttaccat |
505 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
180880 |
gctgcatattgttcagatttgatgttatatgatgactggctctagtgtcgaacacccagttaggagcagccgaatgtgaagtagaagcgaaatttgccat |
180781 |
T |
|
| Q |
506 |
tggttgattgttgcggtgccgcagcggaggacattacttagcaatatggccaaggaaagagcagagttgacatcttggtggaggtctatttccacatgag |
605 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
180780 |
tggttgattgttgcgttgccgcagcggaggacattacttagcaatatggccaaggaaagagcagagttgacatcttggtggaagtctatttccacatgag |
180681 |
T |
|
| Q |
606 |
ttgaaacctcgacctctaccaagatagttagacccacgagtagtggatccatggtactgagattgtttagagaaattgttaccacgccccgaggatggaa |
705 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
180680 |
ttgaaacctcgacctctaccacgatagttagacccacgagtagtggatccatggtactgagattgtttagagaaattgttaccacgccccggggatggaa |
180581 |
T |
|
| Q |
706 |
ttggaaggatacaatcatcttttgagctgcgttgatttggagaggtgtgatgagcgaaattcgctgtaggtacttgaatgtcaacctgaacaacttctcg |
805 |
Q |
| |
|
|||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
180580 |
ttggaaggataccatcatctttcgagctgcgttgatttggagaggtgtgatgagcgaaattcgctgtaggtacttgaatgtcaacctgaacagcttctcg |
180481 |
T |
|
| Q |
806 |
acgcaggtagtcctcatgtgcgagaagatggctatgaagcttcttaaaggtaaaagggtgttggcgtgtgcaaatggaggcagcgatatcattatattcg |
905 |
Q |
| |
|
||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||||||| |
|
|
| T |
180480 |
acgcatgtagtcctcatgtgcgagaagagggctatgaagcttctcgaaggtaaaagggtgttggcgtgtgcgaatggaggcagtgatatcattatattcg |
180381 |
T |
|
| Q |
906 |
gcaccaagtctattgagaacaaagagggtaatatcatcatcagaaagagacttatcaataactgcaagttcgtcaacaagacttttaactaaaaataagt |
1005 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
180380 |
acaccaagtctattgagaacaaagagggtaatatcatcatcagaaagagacttatcaataactgcaagttcgtcagcaagacttttaactaaaaataagt |
180281 |
T |
|
| Q |
1006 |
aatcagttatggacttatcaccctttgtgcagtgttattgaactgagattcaatagcaacc |
1066 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
180280 |
aatcagttatggacttatcaccctttgtgcagtgttattgaactgagattcaatagcaacc |
180220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 836; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 836; E-Value: 0
Query Start/End: Original strand, 6 - 1037
Target Start/End: Complemental strand, 1701707 - 1700676
Alignment:
| Q |
6 |
gacatcatcagtgcaagaactctgaaagagggatgcccgaaacgagcatgccatatagaaggggaggcagagcaggtggaagcaagagtagtgggttgat |
105 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
1701707 |
gacatcatttgtgcaagaactctgaaagagggatgaccgaaacgagcatgccataaagaaggggaggcggagcaggtggaagcaagagcagtgggttgat |
1701608 |
T |
|
| Q |
106 |
attgagacatataatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcacccccgtgacctgatccttcacacagaaaaaggtagggtg |
205 |
Q |
| |
|
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1701607 |
attgagacttaggatgaaaggtgtagagatcactgttacttgaaccgcgcatcaacgtcgcccccgtgacctgatcctttacacagaaaaaggtagggtg |
1701508 |
T |
|
| Q |
206 |
aaattcaagatatgtattgttagacttgcagaatttcttaacagatatgagactatgtttagcatttgggacacaaagcaccttatttaatttgaaagta |
305 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1701507 |
aaattcaagatatgtattgttagacttgcagaatttcttaacatatatgagattatgtttagcatttgggacacaaagcacattatttaatttgaaagta |
1701408 |
T |
|
| Q |
306 |
atattgggggtagggagggtaatagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaa |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| | |
|
|
| T |
1701407 |
gtattgggggtagggagggtaatagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttctggaccgtcatattcggagtgca |
1701308 |
T |
|
| Q |
406 |
gctgcatattgttcagatttgatgttatacgatgactggctccagtgtcaaacacccagttaggagcagccgaatgtgaagcagaagcgaaatttaccat |
505 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
1701307 |
gctgcatattgttcagatttgatgttatatgatgactggctcctgtgtcgaacacccagttaggagcagccgaatgtgaagcagaagcgaaatttgccac |
1701208 |
T |
|
| Q |
506 |
tggttgattgttgcggtgccgcagcggaggacattacttagcaatatggccaaggaaagagcagagttgacatcttggtggaggtctatttccacatgag |
605 |
Q |
| |
|
||||||||||||||| || ||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1701207 |
tggttgattgttgcgttgtagcagctgaggacaatacttagcaatatggccaagcaaagagcagagttgacatcttggtggaggtctatttccacgtgag |
1701108 |
T |
|
| Q |
606 |
ttgaaacctcgacctctaccaagatagttagacccacgagtagtggatccatggtactgagattgtttagagaaattgttaccacgccccgaggatggaa |
705 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||| || | |||||||| |
|
|
| T |
1701107 |
ttgaaacctcgacctctaccacgatagttagacccacgagtattggatccatggtgctgggattgtttagagaaattgttaccacgtcctgtggatggaa |
1701008 |
T |
|
| Q |
706 |
ttggaaggatacaatcatcttttgagctgcgttgatttggagaggtgtgatgagcgaaattcgctgtaggtacttgaatgtcaacctgaacaacttctcg |
805 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1701007 |
ttggaaggataccatcatcctttgagctgcgttgatttggagaggtgtgatgagcgaaattcgctgtaggtacttgaatgtcaacctgaacagcttctcg |
1700908 |
T |
|
| Q |
806 |
acgcaggtagtcctcatgtgcgagaagatggctatgaagcttcttaaaggtaaaagggtgttggcgtgtgcaaatggaggcagcgatatcattatattcg |
905 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
1700907 |
acgcaggtagtcatcatgtgcgagaagatggctatgaagctcctcaaaggtaaaagggtgttggcgtgtgcgaatggaggcagcaatatcattatattcg |
1700808 |
T |
|
| Q |
906 |
gcaccaagtctattgagaacaaagagggtaatatcatcatcagaaagagacttatcaataactgcaagttcgtcaacaagacttttaactaaaaataagt |
1005 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| |
|
|
| T |
1700807 |
gcaccaagtccattgagaacaaatagggtaatatcatcatcagaaagagacttatcaataactgcaagttcgtcagcaagacttttaactgaaaataagt |
1700708 |
T |
|
| Q |
1006 |
aatcagttatggacttatcaccctttgtgcag |
1037 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
1700707 |
aatcagttatggacttatcaccctttgtgcag |
1700676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1037 - 1066
Target Start/End: Complemental strand, 1700633 - 1700604
Alignment:
| Q |
1037 |
gtgttattgaactgagattcaatagcaacc |
1066 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
1700633 |
gtgttattgaactgagattcaatagcaacc |
1700604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 67; Significance: 3e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 67; E-Value: 3e-29
Query Start/End: Original strand, 333 - 471
Target Start/End: Original strand, 26593053 - 26593191
Alignment:
| Q |
333 |
ccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttgatgtta |
432 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| || |||||||| || ||||||||||| ||||||| |||||||| |||||||||| | | |
|
|
| T |
26593053 |
ccaacatgggaaattttcaaacctgtaccatcaccaatttgcacttcttctgggccatcatattcagagtgaatgtgcatattattcagatttgtgctga |
26593152 |
T |
|
| Q |
433 |
tacgatgactggctccagtgtcaaacacccagttaggag |
471 |
Q |
| |
|
|| |||| ||||| ||||| ||||||||||| ||||||| |
|
|
| T |
26593153 |
tatgatggctggccccagtatcaaacacccaattaggag |
26593191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 60; Significance: 5e-25; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 60; E-Value: 5e-25
Query Start/End: Original strand, 328 - 471
Target Start/End: Complemental strand, 5400124 - 5399981
Alignment:
| Q |
328 |
tagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttga |
427 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||||||| || || | |||||||||||||| | |
|
|
| T |
5400124 |
tagagccaacatgagaaatttttaaacctgtaccatcaccaatttgaacttcctcgggaccatcatattctgaatggatgtgcatattgttcaggctgtt |
5400025 |
T |
|
| Q |
428 |
tgttatacgatgactggctccagtgtcaaacacccagttaggag |
471 |
Q |
| |
|
| | | |||| || |||||||||||||||||||||||||||| |
|
|
| T |
5400024 |
ggcaacatgatggctagctccagtgtcaaacacccagttaggag |
5399981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 328 - 471
Target Start/End: Complemental strand, 3541121 - 3540978
Alignment:
| Q |
328 |
tagagccaacatgtgaaattttcaaacctgtaccatcaccaatctgaacttcttcgggaccatcatattcggagtgaagctgcatattgttcagatttga |
427 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||| |||||||| || |||||||||||||| || || | |||||||||||||| | |
|
|
| T |
3541121 |
tagagccaacatgagaaatttttaaacctgtaccatcaccaatttgaacttcctctggaccatcatattctgaatggatgtgcatattgttcaggctgtt |
3541022 |
T |
|
| Q |
428 |
tgttatacgatgactggctccagtgtcaaacacccagttaggag |
471 |
Q |
| |
|
| | | |||| || |||||||||||||||||||||||||||| |
|
|
| T |
3541021 |
ggcaacatgatggctagctccagtgtcaaacacccagttaggag |
3540978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 882 - 951
Target Start/End: Complemental strand, 3540597 - 3540528
Alignment:
| Q |
882 |
gaggcagcgatatcattatattcggcaccaagtctattgagaacaaagagggtaatatcatcatcagaaa |
951 |
Q |
| |
|
|||||||| |||||| |||||| | |||||| | |||||||||| ||||||| | |||||||||||||| |
|
|
| T |
3540597 |
gaggcagcaatatcacgatattccgaaccaagaccattgagaacatagagggtgagatcatcatcagaaa |
3540528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University