View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12910_high_11 (Length: 257)
Name: NF12910_high_11
Description: NF12910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12910_high_11 |
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Alignment Details
Target: chr8 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 32 - 240
Target Start/End: Original strand, 3660456 - 3660670
Alignment:
| Q |
32 |
aagacaaccaaaataaaacgttcatgaactcaccaattaa--agttattagaaaca---tgaggttaaaattgttaaataaaagtaattaaattcaatga |
126 |
Q |
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| T |
3660456 |
aagacaaccaaaataaaacgttcatgaactcaccaattaacgagttattagaaacaatatgaggttaaaattgttaaataaaagtaattaaattcaatga |
3660555 |
T |
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| Q |
127 |
ctttttccctcctctatgaaggagaaattagaaaatggattgtgacttataaatgaaaacaagtgt-aaaaagaattttttaaactcgacagaccaaacc |
225 |
Q |
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| T |
3660556 |
ctttttccctcctctatgaaggagaaattagaaaatggattgtgacttataaatgaaaacaagtgtaaaaaagagttttttaaactcgatagaccaaacc |
3660655 |
T |
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| Q |
226 |
accctaccccatttt |
240 |
Q |
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||||||||||||||| |
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| T |
3660656 |
accctaccccatttt |
3660670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 14 - 47
Target Start/End: Original strand, 3660405 - 3660438
Alignment:
| Q |
14 |
aatatataacaagtcaacaagacaaccaaaataa |
47 |
Q |
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| T |
3660405 |
aatatataacaagtcaacaagacaaccaaaataa |
3660438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 20081956 - 20082001
Alignment:
| Q |
151 |
aaattagaaaatggattgtgacttataaatgaaaacaagtgtaaaa |
196 |
Q |
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| T |
20081956 |
aaattagaaaattgattgtgacttataaataaaaaaacgtgtaaaa |
20082001 |
T |
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