View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12910_high_5 (Length: 430)
Name: NF12910_high_5
Description: NF12910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12910_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 127 - 417
Target Start/End: Complemental strand, 8010747 - 8010457
Alignment:
| Q |
127 |
aacatttcctcattgtaggatccaggagagtattgaaggggtttataaccaccatcactgaaagcccaagttctagcaacagtaagtccatgactagttg |
226 |
Q |
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| T |
8010747 |
aacatttgttcattgtagaagccaggagaatattgcaaaggactataaccaccatcactgaaagcccaagttctagcaacagtaagtccatgactagttg |
8010648 |
T |
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| Q |
227 |
cttcacggaaagcattagaaaccttgaatctctgagatggatcagaagctgtatacattaaccagtaagcattaaagccatttgcatagtaaggatttcc |
326 |
Q |
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| T |
8010647 |
cttcacggaaagcattagaaaccttgaatctctgagatggatcagaagctgtatacattaaccagtaagcattaaagccatttgcatagtaaggatttcc |
8010548 |
T |
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| Q |
327 |
atttaacataaagtgaatgcctcttgttctgacaaaaccatcaccagcagcttctacattgatattgaaacactcttgatggaccaaaatg |
417 |
Q |
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| T |
8010547 |
atttaacataaagtgaatgcctcttgttctgacaaaaccatcaccagcagcttctacattgatattgaaacactcttgatggaccaaaatg |
8010457 |
T |
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Target: chr3 (Bit Score: 168; Significance: 7e-90; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 17 - 200
Target Start/End: Complemental strand, 52433563 - 52433380
Alignment:
| Q |
17 |
agcacaaatataaacaattatatcaaatttttagtgcatatataaatttatgattgaaaaaatggaaatggtgaaggttgagcagtaaattaaatatata |
116 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
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| T |
52433563 |
agcacaaatataaacaattatatcaaatttttggtgcatatataaatttatgattgagaaaatggaaatggtgaaggttgaacagtaaattaaatatata |
52433464 |
T |
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| Q |
117 |
gtaaacctggaacatttcctcattgtaggatccaggagagtattgaaggggtttataaccaccatcactgaaagcccaagttct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52433463 |
gtaaacctggaacatttcctcattgtaggatccaggagagtattgaaggggtttataaccaccatcactgaaagcccatgttct |
52433380 |
T |
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