View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12910_low_10 (Length: 326)
Name: NF12910_low_10
Description: NF12910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12910_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 3 - 308
Target Start/End: Complemental strand, 1756005 - 1755694
Alignment:
| Q |
3 |
cacagaagaaattagaagaaacacagtattgataaaattgagctactattaagaatgttgtaaatctagatttcatttaccataggcctcattgcttctt |
102 |
Q |
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| T |
1756005 |
cacagaagaaattagaagaaacacagtattgataaaattgagctactattaagaatgttgtaaatctaaatttcatttaccataggcctcattgcttctt |
1755906 |
T |
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| Q |
103 |
acatctctgaagcagcgattcaagca------agatggtcgttccattgctcaccaagaagattgtgaagaagcgtgtcaagaggttcatcaggccacaa |
196 |
Q |
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| T |
1755905 |
acatctctgaagcagcgattcaagcagagacaagatggccgttccattgctcaccaagaagattgtgaagaagcgtgtcaagaggttcatcaggccacaa |
1755806 |
T |
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| Q |
197 |
agtgacaggaaaatatgtgtgaagcaaagctggcgcaggccaaagggtattgattcacgagttaggagaaaattcaaagtagttactttgatgcccaaca |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||||||| | |
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| T |
1755805 |
agtgacaggaaaatatgtgtgaagcaaagctggcgcaggccaaagggtattgattcacaagttaggagaaaattcaagggagttactttgatgcccaata |
1755706 |
T |
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| Q |
297 |
ttggatacggct |
308 |
Q |
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| T |
1755705 |
ttggatacggct |
1755694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 127 - 220
Target Start/End: Original strand, 18704553 - 18704646
Alignment:
| Q |
127 |
caagatggtcgttccattgctcaccaagaagattgtgaagaagcgtgtcaagaggttcatcaggccacaaagtgacaggaaaatatgtgtgaag |
220 |
Q |
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| T |
18704553 |
caagatggccgttccattgctcaccaagaagattgtgaagaagcgtgtcaagaggttcatcaggccacaaagtgacaggaaaatatgtgtgaag |
18704646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 219 - 308
Target Start/End: Original strand, 18705247 - 18705336
Alignment:
| Q |
219 |
agcaaagctggcgcaggccaaagggtattgattcacgagttaggagaaaattcaaagtagttactttgatgcccaacattggatacggct |
308 |
Q |
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| T |
18705247 |
agcaaagctggcgcaggccaaagggtattgattcacgagttaggagaaaattcaaaggagttactttgatgcccaatattggatacggct |
18705336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 88 - 128
Target Start/End: Original strand, 18703727 - 18703767
Alignment:
| Q |
88 |
gcctcattgcttcttacatctctgaagcagcgattcaagca |
128 |
Q |
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| T |
18703727 |
gcctcattgcttcttacatatctgaagcagcgattcaagca |
18703767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 4e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 3 - 86
Target Start/End: Original strand, 6133730 - 6133813
Alignment:
| Q |
3 |
cacagaagaaattagaagaaacacagtattgataaaattgagctactattaagaatgttgtaaatctagatttcatttaccata |
86 |
Q |
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| T |
6133730 |
cacagaagaaattagaagaaacatagtattgataaaattgagctactattaagaatgttgtaaatctaaatttcatttaccata |
6133813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 300
Target Start/End: Original strand, 35545581 - 35545655
Alignment:
| Q |
226 |
ctggcgcaggccaaagggtattgattcacgagttaggagaaaattcaaagtagttactttgatgcccaacattgg |
300 |
Q |
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| T |
35545581 |
ctggcgcagaccaaagggtattgattcacgtgtgaggagaaagtttaagggatgtactttgatgccaaatattgg |
35545655 |
T |
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