View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12910_low_12 (Length: 288)
Name: NF12910_low_12
Description: NF12910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12910_low_12 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 12 - 270
Target Start/End: Original strand, 2131421 - 2131679
Alignment:
| Q |
12 |
atggacatcatctaaatcaacaacatgaatgtaatcccgaacctgagaataaggtaagaactatccagtaagatccatagtgaagaaatcaaaaatatac |
111 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2131421 |
atggccatcagctaaatcaacaacatgaatgtaatcccgaacctgagaataaggtaagaactatccagtaagatccatagtgaagaaataaaaaatatac |
2131520 |
T |
|
| Q |
112 |
cttaaaaatggtaaataaatgcatgcacccaacagaaccatccaatgaggacagacagtttgtacaagcaaaatttctaacagggtacaaacgggatgac |
211 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2131521 |
cttaaaaatggtaaataaatgcatgcaaccaacagaaccatccaatgaggacagacagtttgtacaagcaaaatttctaacagggtacaaacgggatgac |
2131620 |
T |
|
| Q |
212 |
gaagagcactgatgcacatgaaataatcaaaacggaaaagttgaagtgaatgataacat |
270 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2131621 |
gaagagcactgatgcacatgaaataatcaaaacggaaaagttgaagtgaatgataacat |
2131679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 23 - 188
Target Start/End: Original strand, 2126869 - 2127035
Alignment:
| Q |
23 |
ctaaatcaacaacatgaatgtaatcccgaacctgagaataaggtaagaactatccagtaagatccatagtgaagaaatcaaaaatataccttaaaaatgg |
122 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||| |||| ||||| ||||||| || || ||||||||||| || | ||| | ||||| |
|
|
| T |
2126869 |
ctaaatcaacaacatgaatgaaatcccgaacctaagaataaggtgagaatcatccaataagatcaatggtaaagaaatcaaaggtagatctttagaatgg |
2126968 |
T |
|
| Q |
123 |
taaataaatgcatgcaccc-aacagaaccatccaatgaggacagacagtttgtacaagcaaaatttc |
188 |
Q |
| |
|
|||||||| || |||||| |||||||| |||| || ||||||| ||| ||| ||||||||||||| |
|
|
| T |
2126969 |
aaaataaatacaggcaccctaacagaacaatccgataaggacaggtagtatgttcaagcaaaatttc |
2127035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 41807742 - 41807785
Alignment:
| Q |
17 |
catcatctaaatcaacaacatgaatgtaatcccgaacctgagaa |
60 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
41807742 |
catcagctaaatcaacaacatgaatgtaatcacggacctgagaa |
41807785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 42030903 - 42030860
Alignment:
| Q |
17 |
catcatctaaatcaacaacatgaatgtaatcccgaacctgagaa |
60 |
Q |
| |
|
||||| ||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
42030903 |
catcagctaaatcaacaacatgaatgtaatcacggacctgagaa |
42030860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University