View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12910_low_13 (Length: 283)
Name: NF12910_low_13
Description: NF12910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12910_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 277
Target Start/End: Complemental strand, 41127050 - 41126774
Alignment:
| Q |
1 |
taatttccttattctcttcatttcgatcagcgccaatcacctgatctctaatctcctccacaattttgtcttgcacatgtggatacttcaccaaattagc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41127050 |
taatttccttattctcttcatttcgatcagcgccaatcacctgatctctaatctcctccacaattttgtcttgcacatgtggatacttcaccaaattagc |
41126951 |
T |
|
| Q |
101 |
catgatccactgcagcgccgtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcactcagcttgcgtttctca |
200 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41126950 |
catgatccactggagcgccgtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcactcagcttgcgtttctcc |
41126851 |
T |
|
| Q |
201 |
tcgggcaactccaattccaaaagagtatctgcataggaaacaacattgtttttgctcaatctcctttcctttgcttc |
277 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41126850 |
tcgggcaactccaattccaaaagagtatctgcataggaaacaacattgtttttgctcaatctcctttccttggcttc |
41126774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 84 - 229
Target Start/End: Complemental strand, 2350964 - 2350819
Alignment:
| Q |
84 |
tacttcaccaaattagccatgatccactgcagcgccgtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcac |
183 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||| |||||||| || || ||| | |||||||||||||||||||||||||| || |||||||||||||||| |
|
|
| T |
2350964 |
tacttcaccaaatttgccataatccattgcaaagccgtggaagtagtatctatcccagcattcaaaaactctgaacaaagactaaccatttcatcttcac |
2350865 |
T |
|
| Q |
184 |
tcagcttgcgtttctcatcgggcaactccaattccaaaagagtatc |
229 |
Q |
| |
|
||| || ||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
2350864 |
tcaatttccgtttctcatcaggcaactccaactccaaaagagtatc |
2350819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 84 - 244
Target Start/End: Complemental strand, 2321089 - 2320929
Alignment:
| Q |
84 |
tacttcaccaaattagccatgatccactgcagcgccgtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcac |
183 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| || ||||| || || || || ||| | ||||||||||| |||||||| | |||||||||| |||| |
|
|
| T |
2321089 |
tacttcaccaaattcgccataatccactgcaaagcagtggaagtagtatccgtcccaccgttcaaaaactccgaacaaagattaaccatttcattctcac |
2320990 |
T |
|
| Q |
184 |
tcagcttgcgtttctcatcgggcaactccaattccaaaagagtatctgcataggaaacaac |
244 |
Q |
| |
|
||| ||| |||||||| |||||||||||||| || ||||||||||||||||| |||||||| |
|
|
| T |
2320989 |
tcaactttcgtttctcctcgggcaactccaactctaaaagagtatctgcatacgaaacaac |
2320929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 84 - 245
Target Start/End: Complemental strand, 2303388 - 2303227
Alignment:
| Q |
84 |
tacttcaccaaattagccatgatccactgcagcgccgtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcac |
183 |
Q |
| |
|
||||| |||||||| ||||| ||||| |||| | ||||| || || || || ||| |||||| ||||||||||||||| | |||||||||| |||| |
|
|
| T |
2303388 |
tacttaaccaaattcgccataatccattgcaaagtagtggaagtagtatccgtcccaccattcagaaactctgaacaaagattaaccatttcattctcac |
2303289 |
T |
|
| Q |
184 |
tcagcttgcgtttctcatcgggcaactccaattccaaaagagtatctgcataggaaacaaca |
245 |
Q |
| |
|
||| ||| |||||||| |||||||||||||| || | ||||||||||||||| ||||||||| |
|
|
| T |
2303288 |
tcaactttcgtttctcctcgggcaactccaactctagaagagtatctgcatacgaaacaaca |
2303227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 120 - 245
Target Start/End: Complemental strand, 2310070 - 2309945
Alignment:
| Q |
120 |
gtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcactcagcttgcgtttctcatcgggcaactccaattcca |
219 |
Q |
| |
|
||||| || |||||||| ||| | |||||||||||||||||||| | |||||||||| ||||||||||| |||||||| || ||| |||| || || | |
|
|
| T |
2310070 |
gtggaagtagtgtctgtcccaccgttcaaaaactctgaacaaagattaaccatttcattctcactcagcttccgtttctcctcaggctactctaactcta |
2309971 |
T |
|
| Q |
220 |
aaagagtatctgcataggaaacaaca |
245 |
Q |
| |
|
|||||||||||||||| ||||||||| |
|
|
| T |
2309970 |
aaagagtatctgcatatgaaacaaca |
2309945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 84 - 245
Target Start/End: Complemental strand, 2326943 - 2326782
Alignment:
| Q |
84 |
tacttcaccaaattagccatgatccactgcagcgccgtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcac |
183 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||| || ||||| || || ||||| ||||||||||||||||| |||||||| || ||||||||||| ||| |
|
|
| T |
2326943 |
tacttcaccaaattcgccataatccaatgcaaagcggtggaagtagtatctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcag |
2326844 |
T |
|
| Q |
184 |
tcagcttgcgtttctcatcgggcaactccaattccaaaagagtatctgcataggaaacaaca |
245 |
Q |
| |
|
||| ||| ||||| || ||||||||||| |||||||| ||||| | |||||||||||| |
|
|
| T |
2326843 |
tcaacttccgtttttccattggcaactccaactccaaaagtgtatccacgtaggaaacaaca |
2326782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 84 - 245
Target Start/End: Complemental strand, 2330658 - 2330497
Alignment:
| Q |
84 |
tacttcaccaaattagccatgatccactgcagcgccgtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcac |
183 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||| || ||||| || || || |||||| | ||||||||||| |||||||| || | ||||||||| |||| |
|
|
| T |
2330658 |
tacttcaccaaattcgccataatccattgcaaagcggtggaagtagtatccgtgccaccgttcaaaaactccgaacaaagactaatcatttcatcctcac |
2330559 |
T |
|
| Q |
184 |
tcagcttgcgtttctcatcgggcaactccaattccaaaagagtatctgcataggaaacaaca |
245 |
Q |
| |
|
||| || |||||||| | ||||||||||| |||| |||||||||| |||| ||||||||| |
|
|
| T |
2330558 |
tcaatttccgtttctcctgaggcaactccaactccataagagtatctacatacgaaacaaca |
2330497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 120 - 245
Target Start/End: Complemental strand, 2293739 - 2293614
Alignment:
| Q |
120 |
gtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcactcagcttgcgtttctcatcgggcaactccaattcca |
219 |
Q |
| |
|
||||| || |||||||| ||| | |||||||||||||||||||| | |||||||||| ||||||||||| |||||||| || ||| |||| || || | |
|
|
| T |
2293739 |
gtggaagtagtgtctgtcccaccgttcaaaaactctgaacaaagattaaccatttcattctcactcagcttccgtttctcctcaggccactctaactcta |
2293640 |
T |
|
| Q |
220 |
aaagagtatctgcataggaaacaaca |
245 |
Q |
| |
|
| |||||||||||||| ||||||||| |
|
|
| T |
2293639 |
agagagtatctgcatatgaaacaaca |
2293614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University