View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12910_low_17 (Length: 244)

Name: NF12910_low_17
Description: NF12910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12910_low_17
NF12910_low_17
[»] chr8 (3 HSPs)
chr8 (18-220)||(41127030-41127232)
chr8 (140-204)||(26506761-26506825)
chr8 (134-210)||(26494710-26494786)
[»] chr2 (7 HSPs)
chr2 (38-204)||(2327023-2327189)
chr2 (38-201)||(2303468-2303631)
chr2 (38-177)||(2293855-2293994)
chr2 (38-196)||(2321169-2321328)
chr2 (38-221)||(2351044-2351227)
chr2 (38-177)||(2310186-2310325)
chr2 (38-221)||(2330738-2330921)


Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 41127030 - 41127232
Alignment:
Q  18 atgaagagaataaggaaattaaagaggaagacttgcagaacctaccatatctaaagtgtgtgattttggaagggctgaggcgtcacccaccggggcactt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  41127030 atgaagagaataaggaaattaaagaggaagacttgcagaacctaccatatctaaagtgtgtgattttggaagggctgaggtgtcacccaccggggcactt 41127129  T
Q  118 tgtgttgccccatgcggtgaaggaggatgtggttttcaacggttacttgctgcctaaaaatgcggtagtgaatttcatggtggcagacatagggagggac 217  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  41127130 tgtgttgccccatgcggtgaaggaggatgtggttttcgacggttacttgctgcctaaaaatgtggtagtgaatttcatggtggcagacatagggagggac 41127229  T
Q  218 cct 220  Q
    |||    
T  41127230 cct 41127232  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 26506761 - 26506825
Alignment:
Q  140 gaggatgtggttttcaacggttacttgctgcctaaaaatgcggtagtgaatttcatggtggcaga 204  Q
    ||||||||| |||| |||||||||||| |||||||||||| |  ||| ||||| |||||||||||    
T  26506761 gaggatgtgatttttaacggttacttggtgcctaaaaatgggacagttaattttatggtggcaga 26506825  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 26494710 - 26494786
Alignment:
Q  134 gtgaaggaggatgtggttttcaacggttacttgctgcctaaaaatgcggtagtgaatttcatggtggcagacatagg 210  Q
    |||| ||||||| | ||||| || ||||||||| |||||||||||| |   |||||||| ||||||||||| |||||    
T  26494710 gtgacggaggatattgttttgaatggttacttggtgcctaaaaatgggactgtgaattttatggtggcagatatagg 26494786  T

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Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 38 - 204
Target Start/End: Original strand, 2327023 - 2327189
Alignment:
Q  38 aaagaggaagacttgcagaacctaccatatctaaagtgtgtgattttggaagggctgaggcgtcacccaccggggcactttgtgttgccccatgcggtga 137  Q
    ||||||||||||||||| || || |  ||| | ||||||||| ||||||||||| |||||||||| ||||| ||||| ||||||||||| ||||| ||||    
T  2327023 aaagaggaagacttgcataaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatccaccagggcattttgtgttgcctcatgcagtga 2327122  T
Q  138 aggaggatgtggttttcaacggttacttgctgcctaaaaatgcggtagtgaatttcatggtggcaga 204  Q
      || ||||||||||| || ||||| ||| |||||||||||| |   ||||||||||||||||||||    
T  2327123 gcgatgatgtggttttgaatggttatttggtgcctaaaaatgggacggtgaatttcatggtggcaga 2327189  T

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Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 38 - 201
Target Start/End: Original strand, 2303468 - 2303631
Alignment:
Q  38 aaagaggaagacttgcagaacctaccatatctaaagtgtgtgattttggaagggctgaggcgtcacccaccggggcactttgtgttgccccatgcggtga 137  Q
    ||||||||||| |||||||| || |  ||| | || |||||  ||||||||||| |||||||||| ||||||||||| ||| ||||||| || |||||||    
T  2303468 aaagaggaagaattgcagaaacttcggtatttgaaatgtgttgttttggaagggttgaggcgtcatccaccggggcattttctgttgccacacgcggtga 2303567  T
Q  138 aggaggatgtggttttcaacggttacttgctgcctaaaaatgcggtagtgaatttcatggtggc 201  Q
    | |||||||||||||| |||||||| ||| |||||||||||| |   |||||||||||| ||||    
T  2303568 aagaggatgtggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatgctggc 2303631  T

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Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 177
Target Start/End: Original strand, 2293855 - 2293994
Alignment:
Q  38 aaagaggaagacttgcagaacctaccatatctaaagtgtgtgattttggaagggctgaggcgtcacccaccggggcactttgtgttgccccatgcggtga 137  Q
    |||||||||||||||||||| || |  ||| | ||||||||| ||||||||||| |||||||||| ||||||||| | |||  |||||| || |||||||    
T  2293855 aaagaggaagacttgcagaaacttcggtatttgaagtgtgtggttttggaagggttgaggcgtcatccaccggggaaatttccgttgccacacgcggtga 2293954  T
Q  138 aggaggatgtggttttcaacggttacttgctgcctaaaaa 177  Q
    | ||||||||||||||  ||||||| ||| ||||||||||    
T  2293955 aagaggatgtggttttggacggttatttggtgcctaaaaa 2293994  T

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Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 38 - 196
Target Start/End: Original strand, 2321169 - 2321328
Alignment:
Q  38 aaagaggaagacttgcagaacctaccatatctaaagtgtgtgattttggaagggctgaggcgtcacccacc-ggggcactttgtgttgccccatgcggtg 136  Q
    ||||||||| |||||||||| || | |||| | ||||| ||| ||||||||||| |||||||||| ||||| |||||| ||||||||| | ||  |||||    
T  2321169 aaagaggaaaacttgcagaaacttcgatatttgaagtgcgtggttttggaagggatgaggcgtcatccaccaggggcattttgtgttggcacacacggtg 2321268  T
Q  137 aaggaggatgtggttttcaacggttacttgctgcctaaaaatgcggtagtgaatttcatg 196  Q
    || |||||||||||||| |||||||| ||| |||||||||||| |   ||||||||||||    
T  2321269 aaagaggatgtggttttgaacggttatttggtgcctaaaaatgggacggtgaatttcatg 2321328  T

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Target: chr2; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 38 - 221
Target Start/End: Original strand, 2351044 - 2351227
Alignment:
Q  38 aaagaggaagacttgcagaacctaccatatctaaagtgtgtgattttggaagggctgaggcgtcacccaccggggcactttgtgttgccccatgcggtga 137  Q
    ||||||||||| |||||||| ||    ||||| || |||||| ||||||||||| |||||||||| |||||||||||   ||||||||| || |||||||    
T  2351044 aaagaggaagatttgcagaaacttttgtatctgaaatgtgtggttttggaagggttgaggcgtcatccaccggggcataatgtgttgccacacgcggtga 2351143  T
Q  138 aggaggatgtggttttcaacggttacttgctgcctaaaaatgcggtagtgaatttcatggtggcagacatagggagggaccctc 221  Q
      ||||||||| |||| |||||||| ||| |||||||||||| |   || ||||| ||||||||||| || ||| |||| ||||    
T  2351144 cagaggatgtgctttttaacggttatttggtgcctaaaaatgggacggtcaattttatggtggcagagatggggtgggatcctc 2351227  T

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Target: chr2; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 177
Target Start/End: Original strand, 2310186 - 2310325
Alignment:
Q  38 aaagaggaagacttgcagaacctaccatatctaaagtgtgtgattttggaagggctgaggcgtcacccaccggggcactttgtgttgccccatgcggtga 137  Q
    |||||||||||||||||||| ||    ||| | ||||||||| ||||||||||| |||||||||| ||| ||||| | |||  |||||| || |||||||    
T  2310186 aaagaggaagacttgcagaaactttggtatttgaagtgtgtggttttggaagggttgaggcgtcatccatcggggaaatttccgttgccacacgcggtga 2310285  T
Q  138 aggaggatgtggttttcaacggttacttgctgcctaaaaa 177  Q
    | ||||||||||||||  ||||||| ||| ||||||||||    
T  2310286 aagaggatgtggttttggacggttatttggtgcctaaaaa 2310325  T

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Target: chr2; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 38 - 221
Target Start/End: Original strand, 2330738 - 2330921
Alignment:
Q  38 aaagaggaagacttgcagaacctaccatatctaaagtgtgtgattttggaagggctgaggcgtcacccaccggggcactttgtgttgccccatgcggtga 137  Q
    ||||||||||||||||| || || |  ||| | ||||| ||| ||||||||||| |||||||||| ||||| ||||| || |||||||| || || ||||    
T  2330738 aaagaggaagacttgcataaacttcggtatttgaagtgcgtggttttggaagggttgaggcgtcatccaccagggcatttcgtgttgcctcacgcagtga 2330837  T
Q  138 aggaggatgtggttttcaacggttacttgctgcctaaaaatgcggtagtgaatttcatggtggcagacatagggagggaccctc 221  Q
      |||||||||||||| || ||||| ||| |||||||| ||| |   |||||||| ||||| ||||| || |||  ||||||||    
T  2330838 gcgaggatgtggttttgaatggttatttggtgcctaaagatgggacggtgaattttatggttgcagagatggggttggaccctc 2330921  T

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