View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12910_low_18 (Length: 235)
Name: NF12910_low_18
Description: NF12910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12910_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 156; Significance: 5e-83; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 24621516 - 24621724
Alignment:
| Q |
1 |
aatcttattcataacaaaccgtcttgatctccgtttgtatagttgacacataacagattgataacaagcaacgttaggtttgacaccagcttttatcatc |
100 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24621516 |
aatcttattcataacaaaccgttttgatctccgtttgtatagttgacacataacagattgataacaagcaacattaggtttgacaccagcttttatcatc |
24621615 |
T |
|
| Q |
101 |
aaagttgctgcacttttaacagatttcacctcttgttcggtaactaaaatttgataaattcttgattgctccaattctttaagcaattcaatagctagtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
24621616 |
aaagttgctgcacttttaacagatttcacctcttgttcggtaactaaagtttgataaa------ggtgcaacaattctttaagcaattcaatagctagtt |
24621709 |
T |
|
| Q |
201 |
taaagcggccgatga |
215 |
Q |
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||||| | ||||||| |
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| T |
24621710 |
taaagtgaccgatga |
24621724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 23787359 - 23787145
Alignment:
| Q |
1 |
aatcttattcataacaaaccgtcttgatctccgtttgtatagttgacacataacagattgataacaagcaacgttaggtttgacaccagcttttatcatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| | |
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| T |
23787359 |
aatcttattcataacaaaccgtcttgatctccgtttgtatagttgacacataacaggttgataacaagcaacattaggtttgacaccagcttttatcacc |
23787260 |
T |
|
| Q |
101 |
aaagttgctgcacttttaacagatttcacctcttgttcggtaactaaaatttgataaattcttgattgctccaattctttaagcaattcaatagctagtt |
200 |
Q |
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| T |
23787259 |
aaagttgctgcacttttaacagatttcacctcttgttcggtaactaaagtttgataaa------ggtgcaacaattctttaagcaattcaacagctagtt |
23787166 |
T |
|
| Q |
201 |
taaagcggccgatgatgcaat |
221 |
Q |
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||||| | ||||||||||||| |
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| T |
23787165 |
taaagtgaccgatgatgcaat |
23787145 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 50 - 144
Target Start/End: Complemental strand, 47569414 - 47569320
Alignment:
| Q |
50 |
ataacagattgataacaagcaacgttaggtttgacaccagcttttatcatcaaagttgctgcacttttaacagatttcacctcttgttcggtaac |
144 |
Q |
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|||||||| ||||||| |||| | ||||||||||||| | ||||||||||||||| ||||||| |||| ||||||||||||||||||||||||| |
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| T |
47569414 |
ataacagagtgataactagcagcattaggtttgacactaccttttatcatcaaagcagctgcacatttagcagatttcacctcttgttcggtaac |
47569320 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 62 - 148
Target Start/End: Complemental strand, 28231775 - 28231689
Alignment:
| Q |
62 |
taacaagcaacgttaggtttgacaccagcttttatcatcaaagttgctgcacttttaacagatttcacctcttgttcggtaactaaa |
148 |
Q |
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|
|||| |||||||||||||||||||||| |||||||||||| || |||| |||||||| ||||| |||||||| ||||||||||||| |
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| T |
28231775 |
taactagcaacgttaggtttgacaccaccttttatcatcatagctgctacacttttagcagatctcacctctccttcggtaactaaa |
28231689 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 60 - 148
Target Start/End: Complemental strand, 28239470 - 28239382
Alignment:
| Q |
60 |
gataacaagcaacgttaggtttgacaccagcttttatcatcaaagttgctgcacttttaacagatttcacctcttgttcggtaactaaa |
148 |
Q |
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||||||||||||| ||||||||||||||| |||||||||||| || ||| ||||| || |||||||||| ||| |||||||||||||| |
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| T |
28239470 |
gataacaagcaacattaggtttgacaccaccttttatcatcacagctgccacacttctagcagatttcacatctcgttcggtaactaaa |
28239382 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 145
Target Start/End: Complemental strand, 28326612 - 28326517
Alignment:
| Q |
50 |
ataacagattgataacaagcaacgttaggtttgacaccagcttttatcatcaaagttgctgcacttttaacagatttcacctcttgttcggtaact |
145 |
Q |
| |
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||||| || ||||||| |||||| |||||| ||| |||| |||||||||| | || | || |||||||| |||||||||||||| |||||||||| |
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| T |
28326612 |
ataaccgagtgataactagcaacattaggtctgagaccaccttttatcatgacagctactacacttttagcagatttcacctctctttcggtaact |
28326517 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 6326538 - 6326612
Alignment:
| Q |
59 |
tgataacaagcaacgttaggtttgacaccagcttttatcatcaaagttgctgcacttttaacagatttcacctct |
133 |
Q |
| |
|
||||||| |||||| |||||||||| ||| |||||||||||| || | ||||| ||||| ||||||| |||||| |
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| T |
6326538 |
tgataactagcaacattaggtttgagaccgccttttatcatcacagctactgcagttttagcagatttgacctct |
6326612 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 16375524 - 16375392
Alignment:
| Q |
1 |
aatcttattcataacaaaccgtcttgatctccgtttgtatagttgacacataacagattgataacaagcaacgttaggtttgacaccagcttttatcatc |
100 |
Q |
| |
|
||||||| ||||||||| | |||||||| || |||||||||| | |||| ||| ||||||| || | | ||||||||||||||| ||||||||||| |
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| T |
16375524 |
aatcttaatcataacaacacttcttgatccccctttgtatagtctatcgataatagagtgataactagaagcattaggtttgacaccaccttttatcatc |
16375425 |
T |
|
| Q |
101 |
aaagttgctgcacttttaacagatttcacctct |
133 |
Q |
| |
|
| | ||||||||||||| |||||| |||||| |
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| T |
16375424 |
acatgtgctgcacttttattagattttacctct |
16375392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 59 - 133
Target Start/End: Original strand, 2657518 - 2657592
Alignment:
| Q |
59 |
tgataacaagcaacgttaggtttgacaccagcttttatcatcaaagttgctgcacttttaacagatttcacctct |
133 |
Q |
| |
|
||||||| |||| | |||||||||||| | || ||||||||| ||||||||| |||||| ||||||||||||| |
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| T |
2657518 |
tgataactagcatcattaggtttgacattatctcttatcatcacagttgctgctcttttagtagatttcacctct |
2657592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 118
Target Start/End: Complemental strand, 27823949 - 27823893
Alignment:
| Q |
61 |
ataacaagcaacgttaggtttgacaccagcttttatcatcaaagttgctgcactttta |
118 |
Q |
| |
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||||| |||||| ||||||||||||||| ||||||| |||| | |||||||||||||| |
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| T |
27823949 |
ataactagcaacattaggtttgacacca-cttttatgatcacaattgctgcactttta |
27823893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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