View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12910_low_2 (Length: 598)
Name: NF12910_low_2
Description: NF12910
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12910_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 308 - 548
Target Start/End: Original strand, 52824696 - 52824937
Alignment:
| Q |
308 |
agatgtatacactacaggg-tgtacacaaaacgttgatgtagctctagtatgaatattttgtttgtttttgtgctcctctcaaccgggttgtgtacgttc |
406 |
Q |
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| T |
52824696 |
agatgtatacactacaggggtgtacacaaaacgttgatgtagctctagtatgaatattttgtttgtttttgtgctcctctcaaccgggttgtgtacgttc |
52824795 |
T |
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| Q |
407 |
ttcataaatcagtgtaaaatattaaatatttctttcacattttgtaaataagatctttaattgaattaaataactcaacttgattgattaatttttgttt |
506 |
Q |
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| T |
52824796 |
ttcataaatcagtgtaaaatattaaatatgtctttcacattttgtaaataagatctttaattgaattaaataactcaacttgattgattaatttttgttt |
52824895 |
T |
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| Q |
507 |
gcaacttgttaaaaggggtagtacgtcttgttaaatgggatt |
548 |
Q |
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| T |
52824896 |
gcaacttgttaaaaggggtagtacatcttgttaaatgagatt |
52824937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 52824380 - 52824640
Alignment:
| Q |
1 |
gcatgcgtaggatctgtgttcctcaagcaccactgtattattctgaaaaaatggataacagatcaaacaccgtcaatttcagcagcagtttgggggattt |
100 |
Q |
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| T |
52824380 |
gcatgcgtaggatctgtgttcctcaagcaccactgtattattctgaaaaaatggataacagatcaaacaccgtcaatttcagcagcagtttgggggattt |
52824479 |
T |
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| Q |
101 |
cacagttccacagataacaatccctcccaattaacattgtcacatcttatnnnnnnnnnnnnncaacaatgatatagacatatctttagatttcatacat |
200 |
Q |
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| T |
52824480 |
cacagttccacagataacaatccctcccaattaacattgtcacatcttattatatatatatatcaacaatgatatagacatatctttagatttcatacat |
52824579 |
T |
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| Q |
201 |
tcattcaacatctgattttctctctagcactcttcttttcacatcatcaaactatcatatc |
261 |
Q |
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| T |
52824580 |
tcattcaacatctgattttctctctagcactcttcttttcacatcatcaaactgtcatatc |
52824640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 548 - 591
Target Start/End: Original strand, 52824960 - 52825003
Alignment:
| Q |
548 |
tcgtgagaaggtttccaaacacatgtatacatcccacaattcat |
591 |
Q |
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| T |
52824960 |
tcgtgagaaggtttccaaacacatgtatacatcccacaattcat |
52825003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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